Table 1 Details of the CUG codon prediction in the genomes of six yeast species
From: Predicting the fungal CUG codon translation with Bagheera
Species | Predicted proteins | Proteins with CUG | CUG codons | CUG position conservation | Sequence similarity | tRNACAG | Accession number | ||
|---|---|---|---|---|---|---|---|---|---|
Std codon usage | AYCU | Std codon usage | AYCU | ||||||
Candida bracarensis CBS 10154 | 37 | 31 | 174 | 140 | 2 | 145 | 8 | n.d. | CAPU00000000 |
Candida castellii CBS 4332 | 35 | 30 | 185 | 142 | 2 | 138 | 11 | n.d. | CAPW00000000 |
Candida maltosa Xu316 | 34 | 20 | 71 | 4 | 35 | 18 | 14 | ser-tRNACAG | AOGT00000000 |
Candida nivariensis CBS 9983 | 34 | 30 | 182 | 131 | 2 | 150 | 7 | n.d. | CAPV00000000 |
Nakaseomyces bacillisporus CBS 7720 | 33 | 25 | 122 | 89 | 3 | 100 | 2 | n.d | CAPX00000000 |
Nakaseomyces delphensis CBS 2170 | 34 | 31 | 194 | 148 | 4 | 159 | 3 | n.d. | CAPT00000000 |