Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function

Table 2 The abundance of sRNAs in E. amylovora Ea1189 detected by RNA-seq

ID	Ea1189 6 hr	Ea1189 12 hr	Δhfq6 hr	Δhfq12 hr	Δ hfq/Ea1189 6 hr (%)	Δ hfq/Ea1189 12 hr (%)
Hrs12	407073^a	681297	14094	35583	3.5	5.2
ArcZ (RyhA)	103836	201144	3264	3264	3.1	1.6
Spf (Spot42)	82478	153057	10269	11084	12.5	7.2
Hrs1	80364	20202	17020	2812	21.2	13.9
RprA	58053	87135	1443	4773	2.5	5.5
Hrs4	52345	15295	45505	11685	86.9	76.4
Hrs13	52070	71176	164	7954	0.3	11.2
Hrs31	50706	53460	33048	1863	65.2	3.5
Hrs21	41942	83884	4556	1876	10.9	2.2
Hrs9	29165	27835	8645	10925	29.6	39.2
Hrs5	21112	22620	3364	2436	15.9	10.8
Hrs19	20520	6840	11780	5016	57.4	73.3
Hrs20	19683	26082	3240	11178	16.5	42.9
Hrs11	15222	22059	2838	6450	18.6	29.2
Hrs2	13992	10362	1188	462	8.5	4.5
Hrs6 (RmaA)	13560	13447	10396	6780	76.7	50.4
Hrs17	10980	10736	3416	1952	31.1	18.2
Hrs8	10230	31515	2475	4785	24.2	15.2
GcvB	9823	85272	209	418	2.1	0.5
Hrs10	7400	14060	1776	5920	24.0	42.1
Hrs27	6363	6868	0	0	0.0	0.0
Hrs23	5796	34224	2208	21252	38.1	62.1
RyhB	5180	13580	140	280	2.7	2.1
MicA	4332	11286	2850	2964	65.8	26.3
Hrs18	4165	4420	2125	1615	51.0	36.5
OmrAB	4000	3360	1120	160	28.0	4.8
Hrs24	3822	1001	91	0	2.4	0.0
Hrs29	3105	1449	414	414	13.3	28.6
Hrs34	2409	1095	438	511	18.2	46.7
Hrs15	2295	2160	135	135	5.9	6.3
Hrs28	2180	6431	109	218	5.0	3.4
Hrs33	2057	6292	1210	3146	58.8	50.0
Hrs30	1848	4704	1092	2100	59.1	44.6
Hrs7	1794	1638	156	0	8.7	0.0
Hrs32	1350	6318	540	4374	40.0	69.2
Hrs26	999	666	111	22	11.1	3.3
MicM (SroB)	870	435	87	0	10.0	0.0
Hrs25	739	757	178	89	24.1	11.8
Hrs16	696	348	0	0	0.0	0.0
Hrs3	324	324	108	0	33.3	0.0

^aThe abundance (per base depth) = the total number of reads aligned to the sRNA gene/the length of the sRNA gene.

ISSN: 1471-2164