Table 1 Pathways of de novo transcriptome involved in immunity and inflammation responses
Pathway | All genes with pathway annotation (23898) | Pathway ID |
|---|---|---|
Endocytosis | 685 (2.87%) | ko04144 |
MAPK signaling pathway | 627 (2.62%) | ko04010 |
Chemokine signaling pathway | 507 (2.12%) | ko04062 |
Wnt signaling pathway | 430 (1.8%) | ko04310 |
Fc gamma R-mediated phagocytosis | 416 (1.74%) | ko04666 |
Cytokine-cytokine receptor interaction | 328 (1.37%) | ko04060 |
Leukocyte transendothelial migration | 327 (1.37%) | ko04670 |
JAK-STAT signaling pathway | 302 (1.26%) | ko04630 |
NF-kappa B signaling pathway | 288 (1.21%) | ko04064 |
T cell receptor signaling pathway | 256 (1.07%) | ko04660 |
B cell receptor signaling pathway | 254 (1.06%) | ko04662 |
Complement and coagulation cascades | 253 (1.06%) | ko04610 |
NK cell-mediated cytotoxicity | 238 (1%) | ko04650 |
Notch signaling pathway | 231 (0.97%) | ko04330 |
TGF-beta signaling pathway | 225 (0.94%) | ko04350 |
Apoptosis | 216 (0.9%) | ko04210 |
TLR signaling pathway | 203 (0.85%) | ko04620 |
NOD-like receptor signaling pathway | 185 (0.77%) | ko04621 |
Antigen-processing and presentation | 136 (0.57%) | ko04612 |
Intestinal immune network for IgA production | 54 (0.23%) | ko04672 |