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Table 1 Frequencies of haplotypes directly observed by LHA in 2-SNP blocks from the CEU_TRIO (whole genome) and HNC_62 (whole exome; aggregated into normal and tumor tissues)

From: Direct observation of genomic heterogeneity through local haplotyping analysis

Subject Total 2-blocks Number of haplotypes in the block
   0 1 2 3 4
NA12878* 225,139 86,719 (38%) 30,869 (14%) 103,339 (46%) 4,138 (2%) 73 (0%)
NA12891 224,079 75,756 (34%) 47,039 (21%) 96,263 (43%) 4,889 (2%) 132 (0%)
NA12892* 231,666 85,234 (37%) 50,738 (22%) 91,208 (39%) 4,394 (2%) 91 (0%)
HNC-normal 72,670 23,050 (32%) 8,535 (12%) 40,054 (55%) 1,006 (1.4%) 25 (0%)
HNC-tumor 73,591 23,100 (31%) 9,245 (13%) 40,005 (54%) 1,214 (1.6%) 27 (0%)
  1. *NA12878 has one block with 6 haplotypes. NA12892 has one block with 5 haplotypes.