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Table 2 2-SNP blocks from 12 inbred mouse strains divided into blocks with 0, 1, 2, 3 or 4 different haplotypes directly observed using LHA

From: Direct observation of genomic heterogeneity through local haplotyping analysis

Strain

Total 2-blocks

Number of haplotypes in the 2-SNP block

  

0

1

2

3

4

129P2

51,379

36,355 (70%)

13,420 (26%)

1,566 (3%)

37 (0%)

0 (0%)

AJ

76,834

27,027 (35%)

31,894 (42%)

16,346 (21%)

1,564 (2%)

3 (0%)

AKRJ

76,059

24,147 (31%)

29,400 (39%)

20,235 (27%)

2,263 (3%)

14 (0%)

BALBcJ

76,942

23,957 (31%)

30,319 (39%)

20,345 (26%)

2,319 (3%)

1 (0%)

C3HHeJ

83,505

26,814 (32%)

32,706 (39%)

21,555 (26%)

2,424 (3%)

6 (0%)

CASTEiJ

148,289

59,358 (40%)

54,330 (37%)

32,196 (22%)

2,393 (2%)

11 (0%)

CBAJ

81,455

27,571 (33%)

33,471 (41%)

18,562 (23%)

1,848 (2%)

3 (0%)

FVBNJ

75,529

23,653 (31%)

27,068 (36%)

21,885 (29%)

2,911 (4%)

12 (0%)

LPJ

80,790

28,320 (35%)

33,192 (41%)

17,521 (22%)

1,751 (2%)

6 (0%)

NODshiLtJ

80,305

27,229 (33%)

32,416 (40%)

18,621 (23%)

2,033 (3%)

6 (0%)

PWKPhJ

140,567

55,784 (40%)

51,437 (37%)

31,151 (22%)

2,182 (2%)

12 (0%)

SPRETEiJ

182,324

69,660 (38%)

62,565 (34%)

47,270 (26%)

2,804 (2%)

23 (0%)