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Table 4 3-SNP blocks in MUR_12 genomes of inbred mouse strains divided into blocks with 0, 1, . 8 different haplotypes directly observed using LHA

From: Direct observation of genomic heterogeneity through local haplotyping analysis

Strain

Total 3-blocks

Number of haplotypes in the block

  

0

1

2

3

4

5

6

7

8

129P2

17,486

11,472 (66%)

5,347 (31%)

635 (4%)

30 (0%)

0 (0%)

2 (0%)

0 (0%)

0 (0%)

0 (0%)

AJ

39,129

10,782 (28%)

18,585 (48%)

8,643 (22%)

1,061 (3%)

50 (0%)

7 (0%)

1 (0%)

0 (0%)

0 (0%)

AKRJ

40,220

9,677 (24%)

17,267 (43%)

11,507 (29%)

1,628 (4%)

122 (0%)

15 (0%)

3 (0%)

1 (0%)

0 (0%)

BALBcJ

40,865

9,750 (24%)

18,678 (46%)

10,823 (26%)

1,502 (4%)

99 (0%)

13 (0%)

0 (0%)

0 (0%)

0 (0%)

C3HHeJ

45,320

11,242 (25%)

20,750 (46%)

11,647 (26%)

1,592 (4%)

79 (0%)

9 (0%)

0 (0%)

1 (0%)

0 (0%)

CASTEiJ

75,328

23,462 (31%)

33,312 (44%)

17,014 (23%)

1,429 (2%)

83 (0%)

23 (0%)

3 (0%)

0 (0%)

2 (0%)

CBAJ

42,474

11,275 (26%)

20,102 (47%)

9,799 (23%)

1,236 (3%)

56 (0%)

4 (0%)

1 (0%)

1 (0%)

0 (0%)

FVBNJ

36,735

8,655 (24%)

15,234 (41%)

10,668 (29%)

1,909 (5%)

232 (1%)

31 (0%)

4 (0%)

0 (0%)

1 (0%)

LPJ

41,474

11,491 (28%)

19,605 (47%)

9,227 (22%)

1,065 (3%)

68 (0%)

15 (0%)

3 (0%)

0 (0%)

0 (0%)

NODshiLtJ

41,494

10,682 (26%)

19,240 (46%)

10,129 (24%)

1,317 (3%)

111 (0%)

11 (0%)

3 (0%)

0 (0%)

0 (0%)

PWKPhJ

70,702

22,248 (32%)

31,027 (44%)

15,825 (22%)

1,502 (2%)

72 (0%)

23 (0%)

4 (0%)

1 (0%)

0 (0%)

SPRETEiJ

95,263

25,115 (26%)

41,794 (44%)

26,270 (28%)

1,955 (2%)

109 (0%)

17 (0%)

2 (0%)

1 (0%)

0 (0%)