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Table 4 3-SNP blocks in MUR_12 genomes of inbred mouse strains divided into blocks with 0, 1, . 8 different haplotypes directly observed using LHA

From: Direct observation of genomic heterogeneity through local haplotyping analysis

Strain Total 3-blocks Number of haplotypes in the block
   0 1 2 3 4 5 6 7 8
129P2 17,486 11,472 (66%) 5,347 (31%) 635 (4%) 30 (0%) 0 (0%) 2 (0%) 0 (0%) 0 (0%) 0 (0%)
AJ 39,129 10,782 (28%) 18,585 (48%) 8,643 (22%) 1,061 (3%) 50 (0%) 7 (0%) 1 (0%) 0 (0%) 0 (0%)
AKRJ 40,220 9,677 (24%) 17,267 (43%) 11,507 (29%) 1,628 (4%) 122 (0%) 15 (0%) 3 (0%) 1 (0%) 0 (0%)
BALBcJ 40,865 9,750 (24%) 18,678 (46%) 10,823 (26%) 1,502 (4%) 99 (0%) 13 (0%) 0 (0%) 0 (0%) 0 (0%)
C3HHeJ 45,320 11,242 (25%) 20,750 (46%) 11,647 (26%) 1,592 (4%) 79 (0%) 9 (0%) 0 (0%) 1 (0%) 0 (0%)
CASTEiJ 75,328 23,462 (31%) 33,312 (44%) 17,014 (23%) 1,429 (2%) 83 (0%) 23 (0%) 3 (0%) 0 (0%) 2 (0%)
CBAJ 42,474 11,275 (26%) 20,102 (47%) 9,799 (23%) 1,236 (3%) 56 (0%) 4 (0%) 1 (0%) 1 (0%) 0 (0%)
FVBNJ 36,735 8,655 (24%) 15,234 (41%) 10,668 (29%) 1,909 (5%) 232 (1%) 31 (0%) 4 (0%) 0 (0%) 1 (0%)
LPJ 41,474 11,491 (28%) 19,605 (47%) 9,227 (22%) 1,065 (3%) 68 (0%) 15 (0%) 3 (0%) 0 (0%) 0 (0%)
NODshiLtJ 41,494 10,682 (26%) 19,240 (46%) 10,129 (24%) 1,317 (3%) 111 (0%) 11 (0%) 3 (0%) 0 (0%) 0 (0%)
PWKPhJ 70,702 22,248 (32%) 31,027 (44%) 15,825 (22%) 1,502 (2%) 72 (0%) 23 (0%) 4 (0%) 1 (0%) 0 (0%)
SPRETEiJ 95,263 25,115 (26%) 41,794 (44%) 26,270 (28%) 1,955 (2%) 109 (0%) 17 (0%) 2 (0%) 1 (0%) 0 (0%)