Table 1 Comparison of multiple algorithms used to generate Arabidopsis Immune Co-expression (AICR) Network
Algorithm | Threshold | Nodes | Edges |
|---|---|---|---|
PCC K = 3 | Top 3 | 8250 | 1371822 |
PCC K = 10 | Top 10 | 8336 | 1374677 |
PCC K = 20 | Top 20 | 8358 | 1379968 |
PCC K = 50 | Top 50 | 8369 | 1396874 |
PCC K = 100 | Top 100 | 8373 | 1453118 |
PCC K = 250 | Top 250 | 8377 | 1758775 |
PCC | 90.00% | 8377 | 2755191 |
ARACNE additive | 90.00% | 1999 | 10253 |
ARACNE multiplicative | 90.00% | 1999 | 10253 |
MRNET | 90.00% | 1999 | 3493 |
CLR | 90.00% | 12 | 11 |
ARACNE additive | 80.00% | 5147 | 32972 |
ARACNE multiplicative | 80.00% | 5147 | 38610 |
MRNET | 80.00% | 5058 | 6049 |
CLR | 80.00% | 57 | 60 |