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Table 2 Descriptive statistics for most significant SNP effects

From: Analysis of the genetics of boar taint reveals both single SNPs and regional effects

Chr

SNP

Pos (bp)Ā§

P value

SNP effect

Proportion phenotypic variance

Sig-fullĻ®

Ā 

Skatole

14

SIRI0000194

153,477,507

1.40E-09**

āˆ’0.26

0.05

1.66E-10

8

ASGA0039716

125,083,628

0.00029

0.04

0.001

0.0018

5

ASGA0025182

28,884,161

0.00052

0.12

0.02

0.00011

3

ALGA0020313

103,881,028

0.00082

0.17

0.01

0.0006

6

MARC0040638

4,515,061

0.00144

āˆ’0.13

0.01

0.00031

Ā 

Androstenone

5

H3GA0016037

20,902,965

6.82E-07**

0.26

0.04

5.17E-07

5

ASGA0025097

24,354,867

3.51E-06*

0.28

0.03

2.03E-06

17

ASGA0095898

50,429,537

1.08E-05*

āˆ’0.52

0.02

0.0001

13

ALGA0073594

203,892,414

2.38E-05*

āˆ’0.17

0.02

3.63E-05

8

ASGA0093454

80,694,489

0.0002

āˆ’0.22

0.02

0.00024

  1. *exceeds 5% genome-wide false discovery rate **exceeds genome-wide significance threshold estimated from 100,000 permutations Ļ®significance when tested in linear mixed model using ASReml software. Ā§ SNP position in base pairs in the Sscrofa10.2 genome assembly.