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Table 1 Putative cis-regulatory motives statistically over-represented in the promoters of differentially expressed genes

From: Analysis of peptide PSY1 responding transcripts in the two Arabidopsis plant lines: wild type and psy1r receptor mutant

Motif PSY1 responsive genes in wild type (77 genes) Differentially expressed genes in psy1rmutant plants (154 genes) Differentially expressed genes in PSY1 treated wild type plants compared to PSY treated psy1rmutant plants (261 genes)
Hits out of 77 genes % Z-score p-value Hits out of 154 genes % Z-score p-value Hits out of 261 genes % Z-score p-value
TATATA 58 75 2.1 0.05 141 92 5.7 0.001 221 85 3.6 0.001
AAAATA 75 97 2.0 0.05 149 97 3.6 0.001 256 98 3.5 0.001
AAAATT 74 96 2.0 0.05 148 96 1.4 ns 254 97 2.6 0.005
AATAAA 76 99 1.7 0.05 148 96 3.1 0.001 253 97 3.8 0.001
TGTATA 53 68 1.7 0.05 114 74 3.0 0.001 199 76 3.2 0.001
TGTATATAT 2 2 ns ns 14 9 ns ns 21 8 ns ns
  1. These sequences have been obtained using the programs Promomer (http://bar.utoronto.ca/ntools/cgi-bin/BAR_Promomer.cgi) and Motif Analysis (TAIR). Z-scores and p-values are those calculated by the corresponding program (Promomer or Motif Analysis).