Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea

BMC Genomics

Table 1 Main assembly metrics for the three assembly strategies and individual libraries

	Range (of individual libraries)^a		Multireads	TrinityNorm	DigiNorm
	min	max	Multireads	TrinityNorm	DigiNorm
Reads	27041064	42477318	430525978	21757448	50557782
Total contigs	62499	120209	275903	277014	362916
Max contig length	9942	15496	20648	19625	15961
Min contig length	201	201	201	201	201
Average length	972	1174	1060	1210	1269
Median length	488	585	443	575	696
Running time (hours)	n/a	n/a	94 (12 threads)	10 (12 threads)	19 (12 threads)
Normalization time (hours)	n/a	n/a	n/a	14 (1 thread)	9 (1 thread)

^a“Range (of individual libraries)” shows for each row the maximum and minimum value found among the 13 individual libraries of kidney transcriptome of the olive mouse Abrothrix olivacea.

ISSN: 1471-2164