Table 3 Breakdown of SSR repeats present in the red clover transcriptome assembly
SSR data | |
|---|---|
Number of seqs searched | 45181 |
Total size of sequences (bp) | 41 943 532 |
Number of SSRs | 3127 |
Number of SSR containing seqs | 2744 |
Number of seqs containing more than one SSR | 322 |
Number of compound SSRs | 192 |
Distribution of SSR repeat types | Â |
Di-nucleotides (≥8 repeats) | 907 (29%) |
Tri-nucleotides (≥6 repeats) | 1879 (60%) |
Tetra-nucleotides (≥5 repeats) | 235 (7%) |
Penta-nucleotides (≥5 repeats) | 53 (2%) |
Hexa-nucleotides (≥5 repeats) | 51 (2%) |