Skip to main content

Table 6 Overlap of the RNAz predicted de novo with the high confident annotation

From: Structured RNAs and synteny regions in the pig genome

RNA class

Annotation

RNAz overlap

Families

Loci

Families

Loci

cisreg-elements

31

139

4

10

lncRNA-loci

58

58

3

3

miRNA

330

369

222

241

putative-miRNA

135

155

14

16

ribozyme

3

8

0

0

rRNA

5

185

2

2

snoRNA

211

638

57

72

snRNA

10

1,030

9

20

tRNA

51

810

36

154

other

7

153

3

4

conflict

9

11

4

6

sum

850

3,556

354

528

  1. Comparison of the strand specific RNAz results with the result of the automatic annotation pipeline. The columns are, RNA class, # RNA families in the high confident annotation, # RNA loci in the high confident annotation, # RNA families that overlap with the RNAz predictions, # RNA loci that overlap with the RNAz predictions.