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Table 8 Confusion Matrix from 3-way classification using SVM classifier (feature length 20)

From: Plus ça change – evolutionary sequence divergence predicts protein subcellular localization signals

 

Divergence

Classical features

Combination

Predicted →

MTS

SP

N-signal-free

MTS

SP

N-signal-free

MTS

SP

N-signal-free

MTS

83

0

96

148

1

30

144

0

35

SP

16

0

37

0

50

3

1

51

1

N-signal-free

50

0

400

20

4

426

15

1

434

  1. Confusion matrix of the 5-fold cross-validation performance of an SVM classifier using: divergence features only, classical features only, and the two combined; is shown for three-way classification on our entire yeast curated ortholog dataset. Classical features are calculated from N-terminal 20 amino acids.
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BMC Genomics

ISSN: 1471-2164

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