Skip to main content

Table 2 Examples of immune genes induced in CMS challenged salmon. Data are challenge to pre-challenged expression ratios (fold changes) on the fish fed with the REF diet

From: Effects of functional feeds on the lipid composition, transcriptomic responses and pathology in heart of Atlantic salmon (Salmo salar L.) before and after experimental challenge with Piscine Myocarditis Virus (PMCV)

Genbank

Gene, symbol

6 wpc

8 wpc

14 wpc

 

Antigen presentation and VRG

U20945

MHCII beta chain

4.80

10.91

8.10

DY713447

CD40

1.73

3.06

3.26

AF508864

MHC class I antigen

3.60

6.17

10.80

DW538400

IFN-induced protein 44, ifit44

6.93

24.09

6.77

117530907

Barrier-to-autointegration factor, bainf

13.20

14.39

2.96

EG795847

GTPase IMAP family member 7, gimap7

3.65

9.05

3.44

 

T cells

AJ841811

Interferon gamma, ifng

3.60

8.03

1.29

DY710412

Granzyme A, graa

21.78

131.75

6.62

NM_0011235

CD8 alpha

3.13

12.06

6.44

213070237

CD45

7.11

10.20

11.83

EG819885

Cytotoxic T-lymphocyte protein 4, ctla

5.18

14.95

3.04

 

Inflammatory markers, regulators

CX032230

TRAF interacting protein, traip

1.26

2.32

3.27

117427898

Chemokine CCL-C24

2.98

10.93

16.14

AJ517803

TNFR associated factor 3, traf3

2.70

1.29

3.15

CU652893

Serum amyloid A5, saa

3.11

1.76

1.53

EG881931

TNF decoy receptor, tnfrsf6b

3.54

10.64

1.41

EG904168

IL1b

2.48

2.66

2.84

117496064

Neutrophil cytosolic factor 4, ncl4

1.43

2.64

0.94

213077403

TNF alpha-induced protein 2, tnfaip2

3.39

5.28

3.95

S48406409

Lymphocyte antigen 75, Ly75/CD205

2.21

2.64

9.20

213081931

Helicase lymphoid-specific, hells

1.03

6.06

6.52

DW578491

Suppressor of cytokine signaling 3b, socs 3b

1.34

1.42

3.41