Table 1 Summary of mapping of RNAseq data used to analyze allele specific expression in F1 cross of B and D
From: Allele-specific expression and eQTL analysis in mouse adipose tissue
Cross | B × D | D × B | B × D | D × B |
|---|---|---|---|---|
Sex | Female | Female | Male | Male |
Animals per pool | 3 | 2 | 3 | 3 |
Total reads | 233,502,200 | 207,580,666 | 249,032,306 | 169,565,576 |
Reads passing QC | 194,608,754 | 176,900,074 | 202,559,286 | 149,205,688 |
(%) | (83.34%) | (85.22%) | (81.34%) | (87.99%) |
Mapped reads | 153,220,639 | 138,009,910 | 144,153,858 | 107,732,312 |
(%) | (78.73%) | (78.02%) | (71.17%) | (72.2%) |
Reads mapping to known SNPs (%) | 4,761,915 | 4,598,505 | 4,617,955 | 3,733,381 |
Reads mapping to exonic SNPs (%)* | (85.5%) | (87.64%) | (87.08%) | (88.48%) |
B to D mapping ratio (independent SNPs) | 1.17 (1.09) | 1.21 (1.15) | 1.15 (1.08) | 1.16 (1.08) |
Covered SNPs | 201,718 | 180,513 | 179,535 | 153,854 |
Covered Genes | 9,877 | 9,679 | 9,796 | 9,492 |