Table 2 Sequencing validation of SNPs showing exclusive expression of B or D alleles
From: Allele-specific expression and eQTL analysis in mouse adipose tissue
Gene | chr | SNP base (mm9) | SNP type | Num reads | RNA seq allele | B (mm9) | D | D by sequence | Control/test | Conclusion |
|---|---|---|---|---|---|---|---|---|---|---|
Kcnk3 | 5 | 30925772 | 3’_UTR | 58 | D | T | C | C | Control | TRUE |
1190005I06Rik | 8 | 123132603 | 3’_UTR | 108 | D | C | G | G | Control | TRUE |
Adra2c | 5 | 35622711 | SYN | 5 | B | T | G | T | Test | FALSE |
Kcnd1 | X | 7408739 | NS | 5.5 | B | T | G | T | Test | FALSE |
Bcl6 | 16 | 23974966 | NS | 53.25 | B | T | C | T | Test | FALSE |
Rab4b | 7 | 27963863 | 5’_UTR | 55.75 | B | A | C | A | Test | FALSE |
Gnaq | 19 | 16207517 | 5’_UTR | 58.25 | B | A | G | A | Test | FALSE |
Psmd5 | 2 | 34726327 | NS | 60.5 | B | T | C | T | Test | FALSE |
Stat3 | 11 | 100765040 | SYN | 160.75 | B | G | A | G | Test | FALSE |
Fam100a | 16 | 4875477 | 3’_UTR | 171.25 | B | C | A | C | Test | FALSE |
Sub1 | 15 | 11920770 | STOP | 173.75 | B | T | A | T | Test | FALSE |
Atox1 | 11 | 55263977 | 3’_UTR | 352.25 | B | T | A | T | Test | FALSE |