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Figure 2 | BMC Genomics

Figure 2

From: A new approach for efficient genotype imputation using information from relatives

Figure 2

Rare allele imputation: allelic r2 in different MAF bins for FImpute, Beagle and Impute2. There were 2000 and 500 young target individuals for imputation from 3 k/6 k to 50 k and from 50 k to 300 k, respectively. In scenarios A and F, reference groups with different sizes were randomly chosen after excluding parents and grandparents. The reference group in scenarios B and C included only parents and grandparents, in scenarios D and E it included all genotyped males and in scenarios G and H it included all genotyped individuals. Pedigree information was considered in scenarios C, E and H and was discarded in scenarios B, C and G.

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