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Table 2 Significantly enriched top 20 GeneGo pathways a

From: Liver transcriptome analysis of Atlantic cod (Gadus morhua) exposed to PCB 153 indicates effects on cell cycle regulation and lipid metabolism

Maps

p-value

FDR

Gene/protein symbols

SCAP/SREBP Transcriptional Control of Cholesterol and FA Biosynthesis

6.0E-09

0

HMDH, SREBP1 (Golgi membrane), ACLY, ACSA, SCD5, SREBP1 precursor, SREBP1 (nuclear), ACACA

Regulation of lipid metabolism_Regulation of lipid metabolism via LXR, NF-Y and SREBP

2.1E-05

0

SREBP1 (Golgi membrane), ACLY, SREBP1 precursor, SREBP1 (nuclear), ACACA

Adiponectin in pathogenesis of type 2 diabetes

1.2E-04

0

SREBP1 precursor, p38alpha (MAPK14), SREBP1 (nuclear), ACACA

Immune response_Oncostatin M signaling via MAPK in mouse cells

2.6E-04

0

EGR1, PPAR-gamma, p38 MAPK, c-Fos

Development_Role of IL-8 in angiogenesis

2.8E-04

0

HMDH, SREBP1 (Golgi membrane), SREBP1 precursor, SREBP1 (nuclear), c-Fos

Immune response_Oncostatin M signaling via MAPK in human cells

3.2E-04

0

EGR1, PPAR-gamma, p38 MAPK, c-Fos

Development_Gastrin in differentiation of the gastric mucosa

3.5E-04

0

PKC-beta, EGR1, PKC, cPKC (conventional)

Development_EGFR signaling pathway

4.2E-04

0

PKC-beta, p38 MAPK, p38alpha (MAPK14), c-Fos, Bax

Regulation of lipid metabolism_Regulation of fatty acid synthase activity in hepatocytes

6.1E-04

0

SREBP1 (Golgi membrane), SREBP1 precursor, SREBP1 (nuclear)

Regulation of lipid metabolism_Insulin regulation of fatty acid methabolism

1.2E-03

0

SREBP1 (Golgi membrane), ACLY, SREBP1 precursor, SREBP1 (nuclear), ACACA

SREBP1 cross-talk with PXR, CAR and LXR

1.6E-03

0

SREBP1 (Golgi membrane), SREBP1 precursor, SREBP1 (nuclear)

G-protein signaling_Ras family GTPases in kinase cascades (schema)

1.6E-03

0

p38 MAPK, p38alpha (MAPK14), c-Fos

DNA damage_ATM / ATR regulation of G2 / M checkpoint

1.6E-03

0

BLM, p38alpha (MAPK14), GADD45 beta

Cell cycle_Transition and termination of DNA replication

2.0E-03

0.1

PCNA, FEN1, POLD cat (p125)

Apoptosis and survival_p53-dependent apoptosis

2.2E-03

0.1

p38alpha (MAPK14), GADD45 beta, Bax

Renin-Angiotensin-Aldosterone System

2.3E-03

0.1

PKC-beta, CaMK I, p38alpha (MAPK14), c-Fos

Neuroprotective action of lithium

2.4E-03

0.1

p38 MAPK, p38alpha (MAPK14), Dsh, Bax

SREBP1 cross-talk with PXR, CAR and LXR/ Rodent version

2.6E-03

0.1

SREBP1 (Golgi), SREBP1 precursor, SREBP1 (nuclear)

Development_Inhibition of angiogenesis by PEDF

2.6E-03

0.1

PPAR-gamma, p38 MAPK, Bax

DNA damage_ATM/ATR regulation of G1/S checkpoint

2.9E-03

0.1

PCNA, BLM, GADD45 beta

  1. aOnly the significantly enriched top 20 pathways are shown here, with the full list presented in Additional file 2: Table S2.