Figure 3
Gene orthology analyses between S. rhizophila DSM14405T, S. maltophilia R551-3 and the clinical S. maltophilia K279a. Circles show from the outermost to the innermost: 1. DNA coordinates; 2, 3. Function-based color-coded mapping of the CDSs predicted on the forward and reverse strands of the S. rhizophila DSM14405T genome, respectively. 4. Orthologous CDSs shared between S. rhizophila DSM14405T and S. maltophilia R551-3. 5. S. rhizophila-specific CDSs, compared with S. maltophilia R551-3. 6. Orthologous CDSs shared between S. rhizophila and S. maltophilia K279a. 7. S. rhizophila-specific CDSs, compared with S. maltophilia K279a. 8. GC plot depicting regions above and below average in gray and black, respectively; 9. GC skew showing regions above and below average in yellow green and magenta, respectively (window size: 10,000Â bp). The assessment of orthologous CDSs was carried out using the reciprocal best BLASTp hit approach with an identity threshold of 30% and evalue of 10-6.