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Table 4 Selected S. rhizophila DSM14405 T genes with known biological roles impacted by the 35°C heat shock

From: Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

Gene/Locus tag

(Putative) Product

Transcription fold change

Biological role

DX03_01700 (rpoH)

sigma 32

3.0

heat shock sigma factor

DX03_05495

negative regulator of sigma 24

3.1

transcription regulation

DX03_11865 (dnaJ)

chaperone DnaJ

3.1

stress response

DX03_11870 (dnaK)

chaperone DnaK

2.9

stress response

DX03_11875 (grpE)

chaperone complex protein

2.6

prevents the aggregation of stress-denatured proteins

DX03_02015 (groS)

co-chaperonin GroES

2.4

heat shock chaperone

DX03_02020 (groL)

chaperonin GroEL

1.9

heat shock chaperone

DX03_12190 (htpG)

heat shock chaperone

2.0

heat shock response

DX03_07545 (fkpA)

chaperone

2.0

stress response

DX03_10250 (clpA)

ATPase with chaperone activity

1.8

stress response

DX03_14890 (yraA)

protease

2.3

degradation of abnormal/stress-denatured proteins

DX03_05505 (degP)

protease

2.1

degradation of abnormal/stress-denatured proteins

DX03_02875 (hslV)

protease

1.5

degradation of abnormal/stress-denatured proteins

DX03_06825 (htpX)

protease

1.5

degradation of abnormal/stress-denatured proteins due to heat shock

DX03_15635 (lon)

Lon Protease

1.5

degradation of abnormal/stress-denatured proteins

DX03_03030 (prc)

protease

1.5

Protein degradation under thermal stress

DX03_05315 (cbpA)

DNA-binding protein; accessory protein for DnaJ

1.8

heat shock response

DX03_11520 (gtaB)

UTP--glucose-1-phosphate uridylyltransferase

1.6

general stress protein

DX03_18990

killer protein

2.4

suicide mechanism

DX03_18795

entericidin EcnAB

3.3

suicide mechanism

DX03_06640

sigma 24

0.3

primary general stress sigma factor

DX03_04075

fimbrial assembly family protein

0.6

pili-driven motility

DX03_04080

pilus assembly protein PilO

0.6

pili-driven motility

DX03_04085

pilus assembly protein PilP

0.6

pili-driven motility

DX03_04090 (pilQ)

pilus assembly protein PilQ

0.6

pili-driven motility

DX03_04405 (fimA)

fimbrial protein

0.6

pili-driven motility

DX03_04895 (pilJ)

fimbrial protein

0.6

pili-driven motility

DX03_10405 (fliC)

A-type flagellin

0.5

pili-driven motility

DX03_12885 (ppdD)

fimbrial protein pilin

0.4

pili-driven motility

DX03_12890

type 4 fimbrial biogenesis

0.6

pili-driven motility

DX03_12905

pre-pilin leader sequence

0.5

pili-driven motility

DX03_12910

pre-pilin leader-like sequence

0.5

pili-driven motility

  1. Fold changes correspond to the S. rhizophila DSM14405T treated with 35°C compared to 30°C (control).