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Table 4 Comparison of the CAZy repertoire identified in the selected white-rot and brown-rot fungal genomes

From: The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

CAZy familiesa Aude Cesu Disq Fome Galu Gano Hean Phch Pust Pyci Scco Sthi Trve Copu Dac Fopi Gltr Popl Sela Woco
GH1 1 3 4 5 3 3 2 2 1 1 3 3 2 3 1 2 5 2 3 1
GH2 7 4 4 2 3 3 3 2 4 3 4 3 5 5 3 4 4 3 3 3
GH3 14 6 8 8 12 13 12 11 14 7 12 17 13 13 9 12 11 6 11 8
GH5 43 18 19 20 19 18 16 19 18 17 16 20 22 21 24 19 19 17 20 18
GH6 2 1 1 2 1 1 1 1 1 1 1 1 1 2 0 0 0 0 1 0
GH7 8 3 4 2 3 3 1 9 5 3 2 3 4 2 0 0 0 0 0 0
GH10 4 6 5 4 7 10 2 6 5 2 5 6 6 3 3 2 3 3 1 4
GH11 3 1 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0
GH12 1 2 3 3 3 3 4 2 2 3 1 5 5 4 1 2 2 2 1 2
GH13 10 7 10 6 9 8 8 9 10 7 13 14 7 6 11 7 9 7 7 11
GH15 2 3 2 1 3 3 5 2 4 1 3 3 4 2 2 4 2 2 2 2
GH26 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 0 0 0
GH27 5 4 6 4 6 3 4 3 5 1 1 5 4 4 2 4 3 3 3 3
GH28 14 6 7 17 13 10 8 4 13 4 3 17 11 13 6 12 10 8 7 9
GH29 3 0 0 0 0 0 2 0 1 0 2 4 0 4 2 0 1 0 1 0
GH31 11 5 6 5 6 7 10 6 8 5 4 8 5 12 6 5 5 4 5 5
GH32 2 0 2 0 1 1 1 0 1 1 1 1 3 2 1 3 1 0 0 0
GH35 6 1 3 2 10 7 4 3 4 2 4 7 2 2 1 2 2 1 3 2
GH36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
GH43 28 2 7 7 11 12 4 4 7 2 19 12 3 6 5 7 6 1 2 1
GH45 2 2 1 0 2 2 2 2 1 1 1 1 2 1 1 1 1 0 0 0
GH51 3 2 2 1 2 2 1 2 3 0 2 3 2 3 2 4 4 1 1 4
GH53 1 6 1 1 1 1 1 1 2 0 1 2 1 1 1 1 2 1 1 1
GH54 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
GH62 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
GH74 1 1 1 4 1 1 1 4 2 1 1 2 1 0 0 0 1 0 1 0
GH78 4 1 5 2 5 4 2 1 7 1 3 3 3 2 0 3 2 3 2 3
GH88 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1
GH93 1 0 1 0 2 2 0 0 1 0 2 1 0 1 0 0 0 0 0 0
GH95 1 1 1 2 1 2 1 1 1 1 2 1 1 1 0 1 1 1 1 1
GH105 3 0 1 1 1 1 2 0 2 0 2 2 1 0 0 2 2 0 0 0
GH115 2 2 2 3 4 3 1 1 1 2 2 2 2 2 2 1 2 1 1 2
GH131 2 1 3 2 3 3 2 3 2 3 2 3 3 2 1 1 1 0 2 0
Total GH 186 89 110 106 133 127 101 100 129 71 116 151 114 118 90 100 100 67 80 81
PL1 2 0 0 2 0 0 2 0 4 0 5 4 0 0 0 0 0 0 0 0
PL3 1 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
PL4 1 0 1 0 0 0 1 0 3 1 3 3 1 0 0 0 2 0 0 0
PL9 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
Total PL 4 0 1 2 0 0 3 0 7 1 13 7 1 0 0 0 2 0 0 0
CE1 4 2 0 0 2 2 1 4 2 3 11 1 3 0 0 0 1 0 0 0
CE8 2 2 3 3 3 3 3 2 6 1 2 5 2 2 3 2 2 2 2 1
CE12 2 0 2 2 1 1 2 0 1 0 2 3 0 0 0 0 0 0 0 0
Total CE 8 4 5 5 6 6 6 6 9 4 15 9 5 2 3 2 3 2 2 1
CBM1 43 17 17 6 14 18 17 30 21 17 5 17 23 2 1 0 1 0 8 0
CBM5 8 3 5 5 10 9 5 3 4 3 3 10 6 11 1 4 4 5 5 4
CBM12 2 1 1 0 1 1 1 0 0 1 1 1 1 1 0 1 1 1 1 1
CBM13 4 6 11 4 9 8 1 5 7 4 17 4 6 6 2 11 1 15 5 5
CBM18 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1
CBM20 4 4 2 2 3 3 3 2 4 1 1 5 4 2 1 2 2 1 2 1
CBM21 3 2 2 2 2 2 2 2 3 2 3 1 2 2 3 2 2 2 1 1
CBM35 2 0 1 1 0 1 2 1 1 0 1 2 1 0 1 1 2 1 2 1
CBM38 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
CBM42 4 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
CBM43 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1
CBM48 3 2 3 3 3 3 2 1 3 2 4 3 3 3 2 3 3 3 2 3
CBM50 21 1 2 2 8 10 1 1 10 1 5 1 1 1 1 15 2 4 1 0
CBM63 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
Total CBM 96 38 46 26 53 57 36 47 57 33 43 47 49 31 14 41 19 35 29 18
AA1_1 0 7 11 10 13 16 14 0 12 5 2 15 7 6 0 5 4 2 4 3
AA1_2 1 1 1 1 1 1 1 1 1 1 0 2 2 1 2 1 1 1 1 1
AA1_3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AA2 18 16 12 17 8 9 7 16 11 9 0 6 26 0 0 0 0 0 0 0
AA3_1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 2 0
AA3_2b 3 6 11 2 4 8 13 3 6 4 2 15 5 0 0 1 6 3 0 0
AA3_3 6 3 4 3 3 5 3 3 4 2 4 7 4 5 1 4 2 4 5 5
AA3_4 3 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0
AA4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0
AA5_1 8 3 9 4 9 9 5 7 9 7 2 8 9 6 3 4 2 2 3 4
AA5_2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AA6 4 0 1 3 1 2 2 4 2 1 4 1 1 2 1 1 3 1 2 1
AA7 2 0 4 0 4 4 3 0 1 0 4 3 0 0 3 5 0 0 0 0
AA8 2 2 2 1 2 2 2 2 1 2 3 2 2 4 0 0 0 0 4 0
AA9 20 9 15 13 15 16 10 15 14 15 22 16 18 10 0 4 4 2 5 2
AA11 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
Total AA 73 48 71 55 61 73 61 53 63 49 46 76 76 35 12 25 27 15 26 16
  1. aSelection of the CAZy families involved in plant cell wall degradation. Full list of CAZy families are provided in Additional file 1: Table S1.
  2. bAA3_2 includes only models with similarity to aryl-alcohol oxidase and glucose oxidase
  3. Species list : Auricularia delicata (Aude); Ceriporiopsis subvermispora (Cesu); Dichomitus squalens (Disq); Fomitiporia mediterranea (Fome); Ganoderma lucidum (Galu); Ganoderma sp. (Gano); Heterobasidion annosum (Hean); Phanerochaete chrysosporium (Phch); Punctularia strigosozonata (Pust); Pycnoporus cinnabarinus (Pyci); Schizophyllum commune (Scco); Stereum hirsutum (Sthi); Trametes versicolor (Trve); Coniophora puteana (Copu); Dacryopinax sp. (Dac); Fomitopsis pinicola (Fopi); Gloeophyllum trabeum (Gltr); Postia placenta (Popl); Serpula lacrymans (Sela); Wolfiporia cocos (Woco).
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