Figure 2

Phylogenetic analysis of E. mundtii CRL1656. (A) Core gene tree. ClustalX aligned sequences of core concatenated proteins were used for the phylogeny reconstruction analysis of enterococci species using the Randomized Axelerated Maximum Likelihood (RAxML) algorithm based on DCMUT with empirical base frequencies and GAMMA distribution model. The reliability of the inferred tree was tested by bootstrapping with 1000 replicates. The tree with the highest log likelihood (−2038246) is shown. Lactococcus lactis SK11 was included as outgroup species. (B) ANI plot. Shared genes with similar function and ANI values between E. mundtii and the bacterial genomes of the indicated strains are plot. E. mundtii CRL1656 (E. mundtii), L. lactis subsp. cremoris SK11 (L. lactis), E. italicus DSM15952 (E. italicus), E. casseliflavus ATCC12755 (E. casseliflavus), E. faecalis 62 (E. fae 62), E. faecalis V583 (E. fae V583), E. saccharolyticus ATCC 43076 (E. saccharolyticus), E. gallinarum EG2 (E. gallinarum), E. faecium Com15 (E. fm Com15), and E. faecium DO (E. fm DO). The data set supporting the results of this article is available in the TreeBASE repository, [http://purl.org/phylo/treebase/phylows/study/TB2:S15854].