Table 2 Summary of simple sequence repeat (SSR) types in P. margaritifera gonad transcriptome
SSR type | Number of motifs | Count | % | Major motif | Count | % |
|---|---|---|---|---|---|---|
Dinucleotides | 6 | 1098 | 14.5 | (GA)n | 245 | 22.3 |
Trinucleotides | 19 | 1151 | 15.2 | (ATG)n | 227 | 19.7 |
Tetranucleotides | 52 | 4259 | 56.2 | (CAGA)n | 1426 | 33.5 |
Pentanucleotides | 98 | 651 | 8.6 | (TTTTG)n | 69 | 10.6 |
Hexanucleotides | 21 | 414 | 5.5 | (CATATA)n | 93 | 22.5 |
Total | 196 | 7573 | Â | Â | Â | Â |