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Table 3 VM-specific defense loci

From: Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development

Locus

Fold VM/S1P

PSI Blast

*p-value

†SignalP

‡TMHMM

CC1G_05299

2076

Ricin B-fold protein

2.95E-240

N

N

CC1G_10614

1481

CFEM domain-containing protein

9.18E-166

Y

N

CC1G_15645

851

CFEM domain-containing protein

1.51E-194

Y

N

CC1G_09154

639

Cerato-platanin protein

6.24E-233

Y

N

CC1G_13813

527

CFEM domain-containing protein

6.90E-195

Y

N

CC1G_05638

67

Peptidoglycan-binding domain 1 protein

1.19E-119

Y

1

CC1G_05246

42

Ricin B-fold protein

7.71E-125

Y

N

CC1G_09155

24

Cerato-platanin protein

3.27E-75

Y

N

CC1G_09421

21

Terpenoid synthase

5.98E-27

N

N

CC1G_11847

17

Lysozyme

2.00E-08

Y

N

CC1G_08066

16

Ricin B-fold protein

1.01E-45

Y

N

CC1G_08310

13

Lysozyme

6.90E-09

Y

N

CC1G_15739

10

Ricin B-fold protein

1.54E-59

Y

N

CC1G_03046

8

Lysozyme

3.68E-05

Y

N

  1. *Fisher’s exact test.
  2. †N or Y indicates the lack or presence of a signal peptide.
  3. ‡N indicates a lack of transmembrane helices, while a number corresponds to the amount of transmembrane helices predicted in the ORF.
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BMC Genomics

ISSN: 1471-2164

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