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Table 1 Probes with highest median ChIP-chip fold-enrichment (FE) across rich media experiments

From: Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast

Probe

Median FE

Notable feature nearby?

Distance (bp)

TEL6R

2.31

telomere

overlap

YCLCdelta1

2.14

tRNA gene

519

TEL9L

2.08

telomere*

*

iYBR057C

1.87

  

iYNL338W

1.87

telomere

overlap

iYMR134W

1.86

  

SNR190

1.83

snoRNA gene

overlap

iYDR543C

1.80

telomere

overlap

iYJR044C

1.78

  

IntYDR064W

1.76

RP gene (RPS13)

overlap

iYHR091C

1.75

  

TEL3R

1.73

telomere

overlap

iYLL066C-1

1.71

telomere

overlap

iYJR144W

1.65

RP gene (RPS4A)

99

iYHR174W

1.64

  

IntYGL103W

1.63

RP gene (RPL28)

overlap

snR128

1.63

snoRNA gene

overlap

iYLL067C-1

1.62

telomere*

*

tW(CCA)P

1.62

tRNA gene*

*

tL(CAA)N

1.61

tRNA gene*

*

tL(CAA)C

1.60

tRNA gene

overlap

tK(UUU)P

1.60

tRNA gene*

*

iYGR295C-1

1.57

telomere*

*

SNR70

1.57

snoRNA gene

overlap

SNR55

1.57

snoRNA gene

overlap

TEL15R-1

1.56

telomere*

*

LSR1

1.54

snRNA gene

overlap

SNR57

1.54

snoRNA gene

overlap

SNR4

1.52

snoRNA gene

overlap

iYJL191W

1.49

RP genes (RPS14B, RPS22A)

10, 2

tM(CAU)O2

1.49

tRNA gene

overlap

itL(GAG)G

1.48

tRNA gene

overlap

iYLR466W

1.48

telomere*

*

iYKRCdelta12

1.48

tRNA gene

overlap

iYOR235W

1.47

snoRNA gene

overlap

iYOL109W

1.46

tRNA gene

overlap

iYJL149W

1.46

snoRNA gene

8

iYORCdelta11

1.46

tRNA gene

overlap

tL(UAG)L2

1.45

tRNA gene*

*

  1. *Probe sequence does not map uniquely to the genome.
  2. . List of probes with highest median ChIP-chip fold-enrichment (FE) across rich media experiments from Harbison et al. [11].