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Table 2 Candidates for hypersensitivity initiation from microarray data

From: Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

RNA transcripts

Increased in incompatible clones

Gene ID

Protein ID

Name

6 h

24 h

72 h

PGSC0003DMG401010883

PGSC0003DMP400019223

R2r3-myb transcription factor

*

  

PGSC0003DMG402004331

PGSC0003DMP400007701

Conserved gene of unknown function

*

  

PGSC0003DMG400030212

PGSC0003DMP400052593

Nitrate reductase

*

  

PGSC0003DMG400001855

PGSC0003DMP400003321

Beta-amylase PCT-BMYI

*

  

PGSC0003DMG400036101

PGSC0003DMP400058205

Gene of unknown function

*

  

PGSC0003DMG400019518

PGSC0003DMP400033920

Pseudo response regulator

*

  

PGSC0003DMG400011502

PGSC0003DMP400020369

PEP carboxylase kinase

*

  

PGSC0003DMG400020209

PGSC0003DMP400035084

Nodulin family protein

*

  

PGSC0003DMG400001460

PGSC0003DMP400002648

Ninja-family protein Os03g0419100

*

  

PGSC0003DMG400025240

PGSC0003DMP400043812

Axi 1 protein

*

  

PGSC0003DMG400020498

PGSC0003DMP400035611

Inositol-1,4,5-triphosphate-5-phosphatase

 

*

 

PGSC0003DMG400023702

PGSC0003DMP400041014

Calmodulin binding protein

 

*

 

PGSC0003DMG400023949

PGSC0003DMP400041401

Abscisic acid receptor PYL4

 

*

 

PGSC0003DMG400001771

PGSC0003DMP400003164

Dead box ATP-dependent RNA helicase

 

*

 

PGSC0003DMG400001387

PGSC0003DMP400002507

Ocs element-binding factor

 

*

 

PGSC0003DMG400010759

PGSC0003DMP400019038

Gene of unknown function

 

*

 

PGSC0003DMG400000731

PGSC0003DMP400001424

Response to dessication RD2

 

*

 

PGSC0003DMG400009982

PGSC0003DMP400017630

BTB/POZ domain-containing protein

 

*

 

PGSC0003DMG400003993

PGSC0003DMP400007118

Citrate binding protein

 

*

 

PGSC0003DMG400003057

PGSC0003DMP400005490

Osmotin

 

*

*

PGSC0003DMG400015267

PGSC0003DMP400026776

Kunitz-type protease inhibitor

 

*

*

PGSC0003DMG400026220

PGSC0003DMP400045511

Major pollen allergen Ory s 1

 

*

*

PGSC0003DMG400008100

PGSC0003DMP400014249

KiTH-2

*

*

*

PGSC0003DMG400008099

PGSC0003DMP400014248

KiTH-2

*

*

*

PGSC0003DMG400008098

PGSC0003DMP400014247

KiTH-2

*

*

*

  1. Genes with increased expression in the two incompatible clones Sarpo Mira and SW93-1015, but not in compatible Desirée. Genes with a minimum 4-fold up-regulation in both Sarpo Mira and SW93-1015 at 6 or 24 hpi and stable or down-regulated in Desirée at 6 and 24 hpi were selected. Up-regulation is indicated with an asterisk. Bolded protein IDs and names indicate proteins for which abundance data was obtained. Symbol (*) indicates the time point in which the change was observed.
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BMC Genomics

ISSN: 1471-2164

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