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Table 3 Candidates for hypersensitivity initiation from apoplast proteomics data

From: Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

Secreted proteins

Increased in incompatible clones

Protein ID

Name

6 h

24 h

72 h

PGSC0003DMP400015021

Cellulase containing protein

*

  

PGSC0003DMP400051976

Glucan endo-1,3-beta-D-glucosidase

*

  

PGSC0003DMP400012140

Polyamine oxidase

*

  

PGSC0003DMP400056168

Mitogen-activated protein kinase kinase kinase

*

  

Q9LTJ3

Putative uncharacterized protein At5g59350

*

  

Q9SWI1

Protein PHYTOCHROME KINASE SUBSTRATE 1

*

  

DES_g15011_t1

Uncharacterized protein

 

*

 

PGSC0003DMP400011041

Leucine-rich repeat family protein

 

*

 

PGSC0003DMP400015631

Aldo-keto reductase family 4 member C10

 

*

 

PGSC0003DMP400027722

Bacterial-induced peroxidase

 

*

 

PGSC0003DMP400028029

Alpha-glucosidase

 

*

 

PGSC0003DMP400030201

Strictosidine synthase

 

*

 

PGSC0003DMP400046981

Kunitz trypsin inhibitor

 

*

 

PGSC0003DMP400049292

Pattern formation protein

 

*

 

PGSC0003DMP400051822

Actin-101

 

*

 

PGSC0003DMP400001286 †

Conserved gene of unknown function †

 

*

 

PGSC0003DMP400002450

Conserved gene of unknown function

 

*

 

PGSC0003DMP400003176

Zinc finger family protein

 

*

 

PGSC0003DMP400008097

Rho guanine dissociation inhibitor

 

*

 

PGSC0003DMP400009086 †

PR1 protein †

 

*

 

PGSC0003DMP400035459

Triacylglycerol lipase

 

*

 

PGSC0003DMP400040683

ATP binding protein

 

*

 

PGSC0003DMP400045856

Pentatricopeptide repeat-containing protein

 

*

 

PGSC0003DMP400057833

Polyprotein protein

 

*

 

Q9FJT0

Putative uncharacterized protein

 

*

 

Q9LDP1

F28H19.2 protein (F2J6.15 protein)

 

*

 

Q9LVB8

Probable carboxylesterase 120 (AtCXE20) (EC 3.1.1.1)

 

*

 

Q9SCZ5

Putative uncharacterized protein F26O13.180

 

*

 

PGSC0003DMP400005465

Osmotin

*

*

 

PGSC0003DMP400018074

Phytophthora-inhibited protease 1

*

*

 

PGSC0003DMP400021164

Non-specific lipid-transfer protein

*

*

 

DES_g20722_t1

Uncharacterized protein

*

*

 

O22214

Putative uncharacterized protein At2g41520

*

*

 

O64572

Expressed protein (Uncharacterized protein)

*

*

 

PGSC0003DMP400006538

Aspartic proteinase nepenthesin-1

*

*

 

PGSC0003DMP400012829

Leucine-rich repeat receptor kinase

*

*

 

PGSC0003DMP400026222

Cytochrome P450

*

*

 

PGSC0003DMP400038388

Rhicadhesin receptor

*

*

 

PGSC0003DMP400059150

Gene of unknown function

*

*

 

PGSC0003DMP400067598

O-methyltransferase

*

*

 

PGSC0003DMP400013560

Gene of unknown function

 

*

*

PGSC0003DMP400053911

Beta-galactosidase

 

*

*

PGSC0003DMP400012597

Epidermis-specific secreted glycoprotein EP1

 

*

*

PGSC0003DMP400016025

Pentatricopeptide repeat-containing protein

 

*

*

PGSC0003DMP400006168

Glycosyl hydrolase family

*

*

*

PGSC0003DMP400017287 †

Cytochrome P450 hydroxylase †

*

*

*

PGSC0003DMP400035498 †

Peroxidase †

*

*

*

PGSC0003DMP400064458

Gag-pol protein

*

*

*

Q9FKV2

Berberine bridge enzyme (FAD-binding and BBE domain-containing protein)

*

*

*

  1. Proteins with increased abundance in the secretome for the two incompatible clones Sarpo Mira and SW93-1015, but not for compatible Desirée. Proteins with a minimum 4-fold increase in both Sarpo Mira and SW93-1015 at 6 or 24 hpi and stable or decreased abundance in Desirée at 6 and 24 hpi were selected. Up-regulation is indicated with an asterisk. The symbol † indicates proteins that were not identified using at least one peptide specific for the listed gene. Symbol (*) indicates the time point in which the change was observed.