Table 1 Assembly comparison to other molluscan transcriptomes sequenced using 454 technology
Species | Normalized | Mean unfiltered read length (bp) | Unfiltered reads (n) | Assembler | % of filtered reads assembled | Contigs (n) | Mean contig length (bp) | Estimated total assembly (bp)* | Reference |
|---|---|---|---|---|---|---|---|---|---|
Mytilus edulis | No | 279 | 2,393,441 | Celera, Cap3 | 92.0 | 74,622 | 645 | 48,131,190 | [40] |
Bathymodiolus azoricus | Yes | 283 | 778,996 | MIRA | 74.8 | 75,407 | 509 | 38,382,163 | [41] |
Hyriopsis cumingii | No | 296 | 981,302 | Cap3 | 70.5 | 47,812 | 634 | 30,312,808 | [42] |
Meretrix meretrix | No | 413 | 751,970 | Cap3 | 87.3 | 35,205 | 679 | 23,904,195 | [43] |
Patinopecten yessoensis | Yes/No | 313 | 970,422 | Cap3 | 86.7 | 32,590 | 618 | 20,140,620 | [44] |
Crassostrea virginica | Yes | 343 | 1,256,652 | Newbler | 86.8 | 28,939 | 629 | 18,202,631 | Present study |
Ruditapes philippinarum | Yes | – | 457,717 | MIRA3 | – | 32,606 | 546 | 17,802,876 | [45] |
Chamelea gallina | Yes | 210 | 298,494 | MIRA | – | 39,750 | 352 | 13,992,000 | [46] |
Laternula elliptica | No | 369 | 1,034,155 | Newbler | 33.9 | 18,290 | 535 | 9,785,150 | [47] |
Crassostrea angulata | No | 309 | 555,215 | Newbler | 79.9 | 10,462 | 723 | 1,057,026 | [48] |
Pinctada martensii | No | 349 | 434,650 | Newbler | – | 3,574 | – | – | [49] |
Pinctada margaritifera | No | 234 | 276,738 | TGICL | 79.2 | 76,790 | – | – | [50] |