|
Species
|
Normalized
|
Mean unfiltered read length (bp)
|
Unfiltered reads (n)
|
Assembler
|
% of filtered reads assembled
|
Contigs (n)
|
Mean contig length (bp)
|
Estimated total assembly (bp)*
|
Reference
|
|---|
|
Mytilus edulis
|
No
|
279
|
2,393,441
|
Celera, Cap3
|
92.0
|
74,622
|
645
|
48,131,190
|
[40]
|
|
Bathymodiolus azoricus
|
Yes
|
283
|
778,996
|
MIRA
|
74.8
|
75,407
|
509
|
38,382,163
|
[41]
|
|
Hyriopsis cumingii
|
No
|
296
|
981,302
|
Cap3
|
70.5
|
47,812
|
634
|
30,312,808
|
[42]
|
|
Meretrix meretrix
|
No
|
413
|
751,970
|
Cap3
|
87.3
|
35,205
|
679
|
23,904,195
|
[43]
|
|
Patinopecten yessoensis
|
Yes/No
|
313
|
970,422
|
Cap3
|
86.7
|
32,590
|
618
|
20,140,620
|
[44]
|
|
Crassostrea virginica
|
Yes
|
343
|
1,256,652
|
Newbler
|
86.8
|
28,939
|
629
|
18,202,631
|
Present study
|
|
Ruditapes philippinarum
|
Yes
|
–
|
457,717
|
MIRA3
|
–
|
32,606
|
546
|
17,802,876
|
[45]
|
|
Chamelea gallina
|
Yes
|
210
|
298,494
|
MIRA
|
–
|
39,750
|
352
|
13,992,000
|
[46]
|
|
Laternula elliptica
|
No
|
369
|
1,034,155
|
Newbler
|
33.9
|
18,290
|
535
|
9,785,150
|
[47]
|
|
Crassostrea angulata
|
No
|
309
|
555,215
|
Newbler
|
79.9
|
10,462
|
723
|
1,057,026
|
[48]
|
|
Pinctada martensii
|
No
|
349
|
434,650
|
Newbler
|
–
|
3,574
|
–
|
–
|
[49]
|
|
Pinctada margaritifera
|
No
|
234
|
276,738
|
TGICL
|
79.2
|
76,790
|
–
|
–
|
[50]
|
- The assemblies are ordered in decreasing size of estimated total assembly. *This calculation is from the mean contig length and number of assembled contigs and is provided as a means to compare transcriptome size.
