Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

Table 2 Ontology for host-microbe interaction, and category assignment genome-wide for data points in Dickeya dadantii (Dd3937) and Pectobacterium carotovora (WPP14)

GO term and name	Dd3937	WPP14
GO:0052192 movement in environment of other organism involved in symbiotic interaction;	41	41
GO:0052048 interaction with host via secreted substance involved in symbiotic interaction	54	53
GO:0051816 acquisition of nutrients from other organism during symbiotic interaction	103	81
GO:0044413 avoidance of host defenses	43	34
GO:0043903 regulation of symbiosis, encompassing mutualism through parasitism	13	9
*GO:0044403 symbiosis, encompassing mutualism through parasitism	13	15
Total	267	233

*this term is a parent term for all others listed in this table and is used as a generic catch all for host-microbe interaction factors lacking more specific GO term annotations.

ISSN: 1471-2164