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Table 6 Top 50 predicted host-microbe interaction factors from Pectobacterium carotovorum WPP14

From: Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

ID

Prob

Name

Product

ADT-0001591

0.912

 

hypothetical protein

ADT-0003750

0.912

 

putative exported protein

ADT-0000805

0.912

dltB

peptidoglycan biosynthesis protein

ADT-0003928

0.911

 

pectate lyase

ADT-0003247

0.911

 

methyl-accepting chemotaxis protein

ADT-0000806

0.911

dltD

poly(glycerophosphate chain) D-alanine transfer protein

ADT-0003745

0.911

 

ABC transporter ATP binding protein

ADT-0002063

0.911

 

hypothetical protein

ADT-0000400

0.911

hasE

HlyD family secretion protein

ADT-0003089

0.911

 

N-terminal fragment of a diguanylate cyclase (pseudogene)

ADT-0003418

0.910

 

methyl-accepting chemotaxis protein

ADT-0000941

0.910

 

methyl-accepting chemotaxis protein

ADT-0006368

0.910

 

hypothetical protein

ADT-0005582

0.910

 

hypothetical protein

ADT-0000983

0.910

 

methyl-accepting chemotaxis protein

ADT-0001252

0.910

 

ABC transporter permease protein

ADT-0003245

0.910

 

methyl-accepting chemotaxis protein

ADT-0000027

0.910

 

methyl-accepting chemotaxis protein

ADT-0003542

0.909

 

putative type IV pilus protein

ADT-0001195

0.909

 

LysR-family transcriptional regulator

ADT-0004315

0.909

astB

sulfate ester ABC transporter permease protein

ADT-0003152

0.909

 

methyl-accepting chemotaxis protein

ADT-0002357

0.908

 

methyl-accepting chemotaxis protein

ADT-0000543

0.908

 

ABC transporter, substrate binding protein

ADT-0001392

0.908

 

putative exported protein

ADT-0002087

0.908

 

putative signaling protein

ADT-0001868

0.908

 

LysR-family transcriptional regulator

ADT-0000803

0.908

 

acyl carrier protein

ADT-0000571

0.908

 

putative cellulase

ADT-0000535

0.908

 

putative lipoprotein

ADT-0001404

0.907

 

hypothetical protein

ADT-0004320

0.907

sftP

TonB-dependent receptor

ADT-0001744

0.907

 

putative exported protein

ADT-0003391

0.907

 

putative membrane protein

ADT-0003535

0.907

 

hypothetical protein

ADT-0003563

0.907

 

LysR-family transcriptional regulator

ADT-0001980

0.907

 

hypothetical protein

ADT-0000804

0.907

dltA

putative D-alanine--poly(phosphoribitol) ligase subunit 1

ADT-0001616

0.906

 

putative transport system membrane protein

ADT-0001394

0.906

 

hypothetical protein

ADT-0001320

0.906

 

methyl-accepting chemotaxis protein

ADT-0001567

0.906

 

putative exported protein

ADT-0005614

0.906

 

hypothetical protein

ADT-0001436

0.906

 

putative component of polysulfide reductase

ADT-0004253

0.906

occQ

octopine transport system permease protein

ADT-0001493

0.905

 

hypothetical protein

ADT-0001492

0.905

 

putative lipoprotein

ADT-0002704

0.905

 

putative lipoprotein

ADT-0002584

0.905

 

ABC transporter, membrane spanning protein