Table 1 List of data resources

ENCODE

http://www.nature.com/encode/#/threads

UCSC chromosome sequence

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/

46 species multiple alignment

http://hgdownload.cse.ucsc.edu/goldenpath/hg19/multiz46way/alignments/

The Genome Reference Consortium

http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc

PhastCons

http://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/

DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis

http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeAwgDnaseUniform

Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis

http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeAwgTfbsUniform

Histone Modifications by ChIP-seq from ENCODE/Broad Institute

http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeBroadHistone

RNA-Seq Atlas

http://medicalgenomics.org/rna_seq_atlas/download