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Table 1 Differential gene expression in drought and recovery treatments as a function of treatment, time of day, and their interaction

From: Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.)

Comparison Source Contrast DEG (n)
Drought (n = 74) Treatment Drought – Control 10,180
Time of day 2:00 PM – 5:00 AM 9,045
Treatment × time d2PM – d5AM 2,365
Recovery (n = 58) Treatment Recovery – Drought 1,514
Time of day 2:00 PM – 10:30 AM 2,196
Treatment × time dREC – dSTR 148
  1. Normalized expression data compared using a linear model with individual as a random effect, and treatment and time as fixed factors.
  2. d5AM, d5AM: treatment effects at 5:00 AM and 2:00 PM, respectively.
  3. dREC, dSTR: change in gene expression between 10:30 AM and 2:00 PM for recovering and stressed plants, respectively.