The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes

Table 3 Proteins involved in nodulation and biological nitrogen fixation in Burkholderia phenoliruptrix BR3459a

	NodA	NodB	NodC	NodD	FixA	FixB	FixC	FixX	NifH	NifD	NifK	NifE	NifN	NifB	NifQ
Betaproteobacteria
B. ambifaria MC40-6	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
B. cenocepacia HI2424	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
B. cenocepacia J2315	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
B. glumae BGR1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
B. multivorans ATCC 17616	-	-	-	-	++?	++?	-	-	-	-	-	-	-	-	+
B. phenoliruptrix BR3459a	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
B. phymatum STM815	+	+	+	+	+	+	+	+	++	+	+	+	+	+	+
B. phytofirmans PsJN	-	-	-	-	-	-	-	-	+p	-	-	-	-	-	-
B. pseudomallei 1710b	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
B. vietnamiensis G4	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+
B. xenovorans LB400	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+
Burkholderia sp. CCGE1001	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Burkholderia sp. CCGE1002	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Burkholderia sp. CCGE1003	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Cupriavidus taiwanensis LMG 19424	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Alphaproteobacteria
Azorhizobium caulinodans ORS 571	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+
Rhizobium etli CFN 42 p42d	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Ensifer meliloti 1021 pSymA	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-
Bradyrhizobium japonicum USDA110	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+
Rhizobium loti MAFF303099
Rhizobium leguminosarum bv viciae 3841 pRL10	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-
Bradyrhizobium BTAi1	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+
Bradyrhizobium ORS278	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+
Xanthobacter autotrophicus Py2	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+
Rhizobium sp NGR234	-	-	-	+	+	+	+	+	+	++	+	+	+	+	+
Rhodopseudomonas palustris BisA53	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+
Agrobacterium tumefaciens C58	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Aurantimonas SI85 9A1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Agrobacterium radiobacter K84	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Agrobacterium vitis S4	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Presence and absence of the B. phenoliruptrix proteins related to nodulation and biological fixation processes in comparison with some Beta- and Alpha-proteobacteria . ++? proteins not identified by BLAST, but present in the Uniprot database (with more than one copy); +p partial sequence identified; ++ two sequences identified for the described protein.

ISSN: 1471-2164