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Table 1 Sequences of transposons identified in the genome of C. heterostrophus race O

From: Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus

Repeat

Class

Order

Superfamily

Number of complete TEs

Number of remaining degenerate copies

Percentage in the genome

Retrotransposon

Class I

-

-

198

311

5.6

Non-LTR retrotransposon

Class I

LINE

-

107

80

2.4

Non-LTR retrotransposon

Class I

LINE

I

101

80

2.4

Non-LTR retrotransposon

Class I

LINE

R2

6

-

<0.00

LTR-retrotransposon

Class I

LTR

-

91

231

3.2

LTR-retrotransposon

Class I

LTR

Copia

10

13

0.2

LTR-retrotransposon

Class I

LTR

Gypsy

81

143

2.9

TRIM

Class I

LTR

Copia

-

7

<0.00

TRIM

Class I

LTR

Gypsy

-

2

<0.00

Solo-LTR

Class I

LTR

Copia

-

3

<0.00

Solo-LTR

Class I

LTR

Gypsy

-

63

<0.00

DNA transposon

Class II

  

29

83

0.3

DNA transposon

Class II

TIR

Tc1-Mariner

29

76

0.3

MITE

Class II

TIR

Tc1-Mariner

-

7

<0.00

Total Elements

   

227

397

5.9