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Figure 3 | BMC Genomics

Figure 3

From: Transcriptome dynamics of Arabidopsis thaliana root penetration by the oomycete pathogen Phytophthora parasitica

Figure 3

Hierarchical clustering of the genes encoding cell wall degrading enzymes and cytoplasmic effectors. Based on GO annotations, sequences corresponding to cell wall degrading enzymes (A) and sequences corresponding to RXLR and Crinkler effectors (B) are presented. Pearson correlation method with average linkage on conditions was used. Gene expression level is indicated as a Log2 transformation of relative value calculated on gene average signal value. Green and red were used for down-regulated and up-regulated conditions respectively. Myc, mycelium; Zoo, zoospores, App, Appressorium; 2.5 h, A. thaliana infected roots recovered 2.5 hours after inoculation; 6 h, A. thaliana infected roots recovered 6 hours after inoculation; 10.5 h, A. thaliana infected roots recovered 10.5 hours after inoculation; 30 h, A. thaliana infected roots recovered 30 hours after inoculation.

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