Table 2 Regions of Genomic Plasticity (RGPs) identified in the K. pneumoniae Kp13 chromosome
Region | Coordinates | Length (kbp) | No. of CDSs | G + C% | Features | Best hit (% coverage, e-value)* |
|---|---|---|---|---|---|---|
RGP1 | 748,751 – 764,155 | 15.4 | 17 | 59% | s.b.; dGC%; transposases | K. pneumoniae MGH 78578 (100%, 0.0) |
RGP2 | 1,031,543 – 1,043,427 | 11.9 | 9 | 37% | s.b.; dGC%; phage; transposases | Enterobacter cloacae ATCC 13047 (10%, 0.0) |
RGP3 | 1,294,343 – 1,335,472 | 41.1 | 55 | 52% | s.b.; dGC%; phage | Escherichia coli IHE3034 (23%, 0.0) |
RGP4 | 1,444,954 – 1,481,531 | 36.6 | 36 | 50% | s.b.; dGC%; T6SS; tRNA; transposases | Salmonella enterica (55 %, 0.0) |
RGP5 | 1,827,686 – 1,893,227 | 65.5 | 59 | 53% | s.b.; tRNA; dGC%; T4SS | Enterobacter hormaechei (93%, 0.0) |
RGP6 | 2,056,825 – 2,088,335 | 31.5 | 35 | 52% | s.b.; T6SS; dGC%; transposases | K. pneumoniae NTUH-K2044 (85%, 0.0) |
RGP7 | 2,278,838 – 2,293,758 | 14.9 | 17 | 46% | s.b.; dGC%; transposases | K. pneumoniae HS11286 (91%, 0.0) |
RGP8 | 2,961,023 – 2,987,614 | 26.6 | 20 | 60% | s.b.; T6SS; dGC% | K. pneumoniae KCTC 2242 (98%, 0.0) |
RGP9 | 3,155,750 – 3,244,119 | 88.4 | 111 | 52% | s.b.; dGC%; phage | K. pneumoniae MGH 78578 (29%, 0.0) |
RGP10 | 3,425,935 – 3,436,504 | 10.6 | 9 | 48% | s.b.; dGC%; transposases | K. pneumoniae MGH 78578 (75%, 0.0) |
RGP11 | 3,898,258 – 3,906,459 | 8.2 | 9 | 54% | s.b.; transposases | K. pneumoniae MGH 78578 (100%, 0.0) |
RGP12 | 4,204,889 – 4,234,405 | 29.5 | 33 | 48% | s.b.; dGC%; tRNA; transposases | K. pneumoniae KCTC 2242 (43%, 0.0) |
RGP13 | 4,660,071 – 4,695,371 | 35.3 | 32 | 50% | s.b.; dGC%; tRNA; transposases | K. pneumoniae KCTC 2242 (60%, 0.0) |