Skip to main content

Table 1 Transcriptomic metadata of chick myogenic cells

From: Cholesterol depletion induces transcriptional changes during skeletal muscle differentiation

 

Transcriptome control

MbCD-treated transcriptome

 

MG-RASTID

4512803.3

4512804.3

 

Transcriptome Size (post QC) (Mbp)

337.68

333.70

 

Average size (post QC) (bp)

115 ± 62

117 ± 58

 

Total number of sequences (post QC)

2,926,445

2,851,594

 

Classification COG

499,559 (17.07%)

622,533 (21.83%)

 
 

Control

MbCD

Total

Different categories identifiable (COG)

3,625

4,160

4,415

Statistically different functions

n.a.

n.a.

1,408(31.89%)1

Up-regulation with MbCD treatment

n.a.

785(55.75%)2

n.a.

Down-regulation with MbCD treatment

623 (44.25%)2

n.a.

n.a.

  1. n.a. not applicable, 1percentage of total different categories, 2percentage of statistically different functions.
  2. From a total of 4,415 identified transcripts, 1,408 (31.89%) had their transcription significantly modified. Among these, 785 genes were up-regulated and 623 were down-regulated after cholesterol depletion.