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Table 1 Genome assembly and annotation statistics for the four Aureobasidium pullulans varieties

From: Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

Statistic Value per A. pullulans variety*
  ApP ApS ApN ApM
Assembly statistics     
Assembly length (Mbp) 29.62 25.80 25.43 26.20
Contig length total (Mbp) 29.59 25.79 25.43 26.20
Number of contigs 209 84 55 174
Contig N50 11 12 10 12
Contig L50 (kbp) 779.84 805.54 1053.18 652.37
Number of scaffolds 186 75 47 150
Scaffold N50 10 11 9 10
Scaffold L50 (Mbp) 1.17 0.82 1.07 0.82
Number of scaffold gaps 23 9 8 24
Scaffolds gaps length (bp) 35277 5530 800 3572
Percentage of scaffolds in gaps (%) 0.12 0.02 0.00 0.01
Number of repeat-covered regions 2593 1835 1964 1836
Length of repeat-covered regions (bp) 428704 224724 197767 255194
Percentage assembly covered by repeats (%) 1.45 0.87 0.78 0.97
GC content (%) 50.02 50.78 51.12 49.85
Gene statistics     
Number of genes 11866 10809 10266 10594
Protein length (amino acids, median) 369 377 380 372
Exon length (bp, median) 369 363 288 294
Gene length (bp, median) 1399 1424 1266 1232
Transcript length (bp, median) 1297 1325 1140 1116
Intron length (bp, median) 57 57 57 57
Number of genes with intron 8407 7819 7632 7797
Percentage of genes with an intron 70.85% 72.34% 74.34% 73.60%
Introns per gapped gene (median) 2 2 2 2
Intergenic distance (bp, median) 681 658 699 695
GC content of exons (%) 52.52 52.53 52.99 51.87
Functional annotations     
Genes with KEGG annotation [n, (%)] 9322 (78.56) 8798 (81.40) 8745 (85.18) 8855 (83.59)
Genes with KOG annotation [n, (%)] 7620 (64.22) 7253 (67.10) 7165 (69.79) 7245 (68.39)
Genes with Swissprot hit [n, (%)] 7909 (66.65) 7516 (69.53) 7465 (72.72) 7541 (71.18)
Genes with Pfam domain [n, (%)] 6613 (55.73) 6305 (58.33) 6203 (60.42) 6283 (59.31)
Genes with transmembrane domain [n, (%)] 2333 (19.66) 2140 (19.80) 1984 (19.33) 2021 (19.08)
  1. *ApP, A. pullulans var. pullulans; ApS, A. pullulans var. subglaciale; ApN, A. pullulans var. namibiae; ApM, A. pullulans var. melanogenum.