Table 1 Genome assembly and annotation statistics for the four Aureobasidium pullulans varieties
Statistic | Value per A. pullulans variety* | |||
|---|---|---|---|---|
ApP | ApS | ApN | ApM | |
Assembly statistics | ||||
Assembly length (Mbp) | 29.62 | 25.80 | 25.43 | 26.20 |
Contig length total (Mbp) | 29.59 | 25.79 | 25.43 | 26.20 |
Number of contigs | 209 | 84 | 55 | 174 |
Contig N50 | 11 | 12 | 10 | 12 |
Contig L50 (kbp) | 779.84 | 805.54 | 1053.18 | 652.37 |
Number of scaffolds | 186 | 75 | 47 | 150 |
Scaffold N50 | 10 | 11 | 9 | 10 |
Scaffold L50 (Mbp) | 1.17 | 0.82 | 1.07 | 0.82 |
Number of scaffold gaps | 23 | 9 | 8 | 24 |
Scaffolds gaps length (bp) | 35277 | 5530 | 800 | 3572 |
Percentage of scaffolds in gaps (%) | 0.12 | 0.02 | 0.00 | 0.01 |
Number of repeat-covered regions | 2593 | 1835 | 1964 | 1836 |
Length of repeat-covered regions (bp) | 428704 | 224724 | 197767 | 255194 |
Percentage assembly covered by repeats (%) | 1.45 | 0.87 | 0.78 | 0.97 |
GC content (%) | 50.02 | 50.78 | 51.12 | 49.85 |
Gene statistics | ||||
Number of genes | 11866 | 10809 | 10266 | 10594 |
Protein length (amino acids, median) | 369 | 377 | 380 | 372 |
Exon length (bp, median) | 369 | 363 | 288 | 294 |
Gene length (bp, median) | 1399 | 1424 | 1266 | 1232 |
Transcript length (bp, median) | 1297 | 1325 | 1140 | 1116 |
Intron length (bp, median) | 57 | 57 | 57 | 57 |
Number of genes with intron | 8407 | 7819 | 7632 | 7797 |
Percentage of genes with an intron | 70.85% | 72.34% | 74.34% | 73.60% |
Introns per gapped gene (median) | 2 | 2 | 2 | 2 |
Intergenic distance (bp, median) | 681 | 658 | 699 | 695 |
GC content of exons (%) | 52.52 | 52.53 | 52.99 | 51.87 |
Functional annotations | ||||
Genes with KEGG annotation [n, (%)] | 9322 (78.56) | 8798 (81.40) | 8745 (85.18) | 8855 (83.59) |
Genes with KOG annotation [n, (%)] | 7620 (64.22) | 7253 (67.10) | 7165 (69.79) | 7245 (68.39) |
Genes with Swissprot hit [n, (%)] | 7909 (66.65) | 7516 (69.53) | 7465 (72.72) | 7541 (71.18) |
Genes with Pfam domain [n, (%)] | 6613 (55.73) | 6305 (58.33) | 6203 (60.42) | 6283 (59.31) |
Genes with transmembrane domain [n, (%)] | 2333 (19.66) | 2140 (19.80) | 1984 (19.33) | 2021 (19.08) |