Transcriptome-wide analysis of microRNA expression in the malaria mosquito Anopheles gambiae

Biryukova, Inna; Ye, Tao; Levashina, Elena

doi:10.1186/1471-2164-15-557

BMC Genomics

Table 1 Novel A. gambiae miRNAs

From: Transcriptome-wide analysis of microRNA expression in the malaria mosquito Anopheles gambiae

miR sequence	Seed	Predominant arm usage	5p-raw read number	3p-raw read number	Conservation
GUCGACAGAGAGAUAAAUCACU	UCGACAG	3p	5649	207160	aae-miR-2940
UGUUAACUGUAAGACUGUGUCU	GUUAACU	3p	17	76143	aae-miR-999
CUAAGUACUAGUGCCGCAGGAG	UAAGUAC	5p	63196	396	aae-miR-252
UAGCACCAUUCGAAAUCAGUAC	AGCACCA	3p	63	8597	aae-miR-285
UCAAUUCCGUAGUGCAUUGCAGU	CAAUUCC	5p	3981	39	aae-miR-932
GUAGGCCGGCGGAAACUACUUGC	UAGGCCG	3p	10	2313	bmo-miR-2796
UGACUAGAGGCAGACUCGUUUG	GACUAGA	3p	195	1637	aae-miR-2945
UAGCACCAUGAGAUUCAGCUC	AGCACCA	3p	86	1674	aae-miR-998
UGACUAGACCGAACACUCGUAUC	GACUAGA	3p	4	503	aae-miR-286b
UUGGUGUUAUAUCUUACAGUGAG	UGGUGUU	3p	1	597	dme-miR-971
GAAGGAACUUCUGCUGUGAUCU	AAGGAAC	5p	142	7	aae-miR-2944a
GAAGGAACUCCCGGUGUGAUAUG	AAGGAAC	5p	104	21	aae-miR-2944b
UAUCACAGCCAGCUUUGAAGA	AUCACAG	3p	1858	25519	aae-miR-2a
UGGCAAGAUGUUGGCAUAGCU	GGCAAGA	5p	24655	180	aae-miR-31
AUUAGAAUGUGGAAUCUGUUUUU	UUAGAAU	5p	1572	803	hsa-miR-561 seed, conserved in aae, cqu
UGAACACCCAUUUAUUGCCGACAGG	GAACACC	3p	12	1341	miR conserved in aae, miR-N3
CCCUGUGGAACACCAUGUACGAUGG	CCUGUGG	3p	0	202	bmo-miR-3389 seed, conserved in aae
CAGUACUUCUGCAAUGCAACCC	AGUACUU	3p	113	1577	aae-miR-33
AUGGAUUCGAUCGAUCGAGUGC	UGGAUUC	5	236	48	dme-miR-976 seed
UAGUACGAAUACGUACGAGGGA	AGUACGA	3p	17	61	aae-miR-2946 seed
UGUGGUGGCACACUUUGACAAC	GUGGUGG	3p	2	15	tca-miR-3897 seed
AAUGGCACUCUUGUUGGACAAG	AUGGCAC	5p	24	2	aae-miR-263a seed
*CGAUACACGAACUGGGGCUCUCUCC	GAUACAC	3p	49	139	dme-miR-318 seed
UUAUACUUCCUGCUUCACCGAU	UAUACUU	3p	0	120	aae-miR-305 seed
GAUUUGUCCAAAAAGGAUG	AUUUGUC	3p	0	14	aae-miR-981
AGGAUUACGAUGAAGUGUUUGCGCC	GGAUUAC	5p	135	0	bmo-miR-2846 seed, conserved in aae
AGAAAGACAUGGGUAGUGAGAU	GAAAGAC	3p	1512	13384	aae-mir-71
ACACGAUAAGAGGAAAGUUUACG	CACGAUA	5p	79	11	No, miR-N1a (Figure 5 D)
*UUGAAUUACGUCGGCAAUUUUUGGG	UGAAUUA	3p	2	518	hsa-miR-183 seed, miR-N4
UUAGAUUCCCAGAUCGUCAGAU	UAGAUUC	3p	1	48	hsa-miR-376a seed
UAAGUGCAAAUCGUUGUAGUCGGUU	AAGUGCA	5p	449	0	hsa-miR-519b seed, miR-N6
UUGACUGUCGCCUCUGCGGAUG	UGACUGU	5p	103	0	hsa-miR-943 seed
UUGGAGAUCAAAAGACGAUGUUUUU	UGGAGAU	5p	20	2	hsa-miR-1270 seed
AUGGGGUUUGACCUGCUGGGC	UGGGGUU	5p	41	0	hsa-miR-3170 seed
*UCUCCGUGGACGGCUGUCGAUGCC	CUCCGUG	5p	148	1	hsa-miR-3605 seed
CGGGCUGUUGCAGCAGGUGCCU	GGGCUGU	3p	0	67	hsa-miR-4741 seed
GUAGUCCGGAGUGGAGUC	UAGUCCG	5p	30	0	hsa-miR-6723 seed
*UAGGCCCGACCAGAACUCGCUG	AGGCCCG	3p	0	12	hsa-miR-4747 seed
AACGAGUUUCCCGAUACGACUG	ACGAGUU	5p	282	4	No
CAUUACCGAUGGAUCCUUACCG	AUUACCG	5p	187	28	No, miR-N2 (Figure 5 D)
UGCAUUCAGUGGGGCGGUCGU	GCAUUCA	3p	1	103	No
UAGACGAUUUCGGAAUGGCACAUCC	AGACGAU	3p	5	492	No
CCGGUGAACUGCUGUGCAGGGGCGC	CGGUGAA	3p	3	209	No
UCCGGCUACCGACUAACGGCUC	CCGGCUA	3p	2	68	No
ACUCCGGUCGACUCUGGACGAC	CUCCGGU	3p	11	34	No
UUGCGAGAGGACCUAUAAUGACU	UGCGAGA	5p	35	0	No
UUUUGGAACACAAGCUCGGCAGGCC	UUUGGAA	3p	0	241	No
AAUUGGACUCUAUAGCACCCU	AUUGGAC	3p	3	78	No
AACCGACAGAUCAUUGGCCAGA	ACCGACA	3p	0	2243	No
AGGAUUCGUAGUGCUACUGUGCAGA	GGAUUCG	5p	249	1	No
UACUUUCGCAAAUAGAUCGCUGCCU	ACUUUCG	5p	617	2	No, miR-N5
UUGGUCUGAUUGCCUACACUGGCUU	UGGUCUG	5p	497	4	No
UAGGAUCUAUUGACAUUGCAGCCU	AGGAUCU	5p	145	0	No
CUCGCUGGCUGUCCGCAAACU	UCGCUGG	3p	12	62	No
UGAGAGAACGAAAGCAUUCCUU	GAGAGAA	3p	1	34	No
AAUUGGACUCUGUGGCACCCU	AUUGGAC	5p	62	0	No
CGCUCGACUAUUUAUCGCCCGAGA	GCUCGAC	3p	2	252	No
*ACGAGGCGAAGACUUUGUUGCC	CGAGGCG	3p	2	12	No

*low confidence candidate miRNA.
aae - Ae. aegypti.
cqu - C. quinquefasciatus.
dme - D. melanogaster.
bmo - B. mori.
hsa - H. sapiens.
tca - T. castaneum.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com