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Table 3 Top ten single nucleotide polymorphism (SNP) markers significantly (chromosome-wise false discovery rate < 0.05) associated with the cell-mediated immune response in Holstein cows and genes within 250,000 base pairs flanking the markers

From: A genome-wide association study of immune response traits in Canadian Holstein cattle

BTA SNP Location (bp) -log10P Entrez gene ID
19 ARS-BFGL-NGS-101995 53,606,174 5.28 RBFOX3, CBX8, CBX2
27 ARS-BFGL-NGS-38750 4,845,275 5.25 ZNF705A, AGPAT5, SPAG11B, TAP, DEFB103B
19 UA-IFASA-7781 53,963,109 4.92 CANT1, LGALS3BP, TIMP2, C1QTNF1, RBFOX3, USP36
23 Hapmap46836-BTA-55820 27,923,154 4.91 TCF19, SFTA2, MICB, NRM, FLOT1, PSORS1C2, CDSN, POU5F1, MDC1, CCHCR1, BOLA, DDR1, GTF2H4, TUBB, DHX16, ATAT1, MRPS18B, KIAA1949, IER3
12 BTA-86812-no-rs 23,174,195 4.89 LHFP, STOML3, PROSER1, NHLRC3
23 ARS-BFGL-NGS-16619 27,887,914 4.85 POU5F1, PSORS1C2, IFITM3, TCF19, MICB, BOLA, IER3, FLOT1, TUBB, CCHCR1, NRM, DDR1, CDSN, GTF2H4, MDC1, KIAA1949, SFTA2
23 BTA-27247-no-rs 26,736,263 4.84 NOTCH4, BTN3A2, TSBP
5 ARS-BFGL-NGS-627 109,734,406 4.69 BID, LGALS2, CDC42EP1, GGA1, MICAL3, BCL2L13, PEX26, TUBA8, ATP6V1E1
5 ARS-BFGL-NGS-10118 109,774,563 4.69 TUBA8, MICAL3, BID, BCL2L13, CDC42EP1, LGALS2, GGA1, PDXP, LGALS1, NOL12, MIR2438, ATP6V1E1, PEX26
18 BTA-24218-no-rs 32,925,593 4.61 CDH11