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Table 2 Differences between Jeju and FS4401 in sequences of known genes

From: Extensive structural variations between mitochondrial genomes of CMS and normal peppers (Capsicum annuum L.) revealed by complete nucleotide sequencing

Genes in Jeju

Gene length in Jeju

Polymorphism in FS4401

Corresponding sequence in tobacco

matR

1977

904 gcA (A) → 904 gcG (A)

904 gcG (A)

atp4

597

16 acGAATATGCAg (TNMQ)

16 acGAATATGCAg (TNMQ)

→ 16 acg (T)

atp8

462

178 ccCAACAGTTTg (PNSL)

178 ccCAACTGTTTg (PNCL)

→ 178 ccg (P)

rpl2

999

337 ccCGGGAAGGGggat (PGKGD)

337 ccCGGGAAGGGggat (PGKGD)

→ 337 ccggat (PD)

sdh3 a

333

178 tTCttc (FF)

178 tCTttc (SF)

→ 178 tCTttc (SF)

atp6

1296

ψatp6-2

Higher similarity with atp6-1 in FS4401

283 gGt (G) → gCt (A)

316 ACa (T) → CAa (Q)

454 aaAGaa (KE) → aaCCaa (NQ)

no similarity in downstream of 931th bp due to DNA rearrangement

atp6-1

no similarity in upstream of 497th bp due to DNA rearrangement

  1. aThe SNP polymorphism can potentially be eliminated if the plant mitochondrial.
  2. C-to-U RNA editing occur.
  3. The pattern of base changes and corresponding amino acid changes is described. The polymorphic site (the number indicates the position of the first nucleotide), with the polymorphic nucleotide capitalized, and the corresponding amino acid in parentheses, is given to the left of the arrow for Jeju and to the right of the arrow for FS4401.