Figure 1
From: Comparing reference-based RNA-Seq mapping methods for non-human primate data
Mapping Statistics for Reference Transcriptome and Reference Genome Methods. Panel A shows the mapping, unique, duplication, base mismatch, and rRNA rate for each of the mapping methods. Error bars show plus/minus one standard deviation. Mapping rate is computed as mapped reads divided by total reads, unique rate is computed as unique mapped reads divided by mapped reads, duplication rate is computed as duplicate mapped reads divided by mapped reads, base mismatch rate is computed as the number of bases not matching the reference divided by the number of aligned bases, and rRNA rate is computed as the number of reads mapping to ribsomal RNA divided by the total reads. Panel B shows the mapping locations for the two reference genome mapping methods. Each value is computed as the number of reads mapping to a type of region divided by the total reads mapped.