Table 4 Summary of comparison results
From: Comparing reference-based RNA-Seq mapping methods for non-human primate data
Method | Mapping | Intragenic | Detected | Detected | Gene |
|---|---|---|---|---|---|
Rate | mapping rate | transcripts | divergent transcripts | Expressionr2 | |
Transcriptome Mapping with Bowtie2 | ◐ |
| ◐ | ◐ |
|
Transcriptome Mapping with Stampy | ◐ |
|
|
|
|
Genome Mapping with Bowtie2 |
|
| ◐ | ◐ | ◐ |
Genome Mapping with Stampy |
|
| ◐ | ◐ |
|
Genome Mapping with TopHat2 | ◐ | ◐ | ◐ | ◐ | ◐ |
Genome Mapping with GSNAP |
|
| ◐ | ◐ | ◐ |
- Good, ◐ - Better, 
- Best.
- Good, 
- Best.