Table 3 Comparison of Prodigal and proteomgenomic mapping coordinates
From: Proteogenomic mapping of Mycoplasma hyopneumoniae virulent strain 232
5' extensions | |||||
|---|---|---|---|---|---|
Locus | PGM Start | Prodigal Start | Stop | Direction | RBS Motif* |
mhp063 | 74166 | 74166 | 76196 | + | AGxAGG/AGGxGG |
mhp073 | 91023 | 91023 | 92147 | + | GGA/GAG/AGG |
mhp451 | 555692 | 555692 | 554796 | - | AGGAG |
Intergenic mappings | |||||
Gene | PGM Start | Prodigal Start | Stop | Direction | RBS Motif* |
gatC | 34617 | 34617 | 34910 | + | GGxGG |
rpmF | 120237 | 120237 | 120040 | - | AGGA |