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Table 7 Intron positions within OR genes

From: Inventory of the cichlid olfactory receptor gene repertoires: identification of olfactory genes with more than one coding exon

 

OR names

Last codon

Intron phase

Codon position

Intron position

2 coding exons

contig034988-NyeORs.A033

GTC.AG

2

159

TM4

 

contig050024-NyeORs.W129

CAA.CAG

0

50

IN 1

 

contig050025-NyeORs.W131

AAC.AAG

0

50

IN 1

 

contig050025-NyeORs.W130

CAC.CAG

0

50

IN 1/TM2

 

contig050026-NyeORs.W132

CAC.CAG

0

52

IN 1

 

contig090286-BriORs.W112

CAA.CAG

0

50

IN 1

 

contig090288-BriORs.W113

CAA.CAG

0

50

IN 1

 

contig090291-BriORs.W114

AAC.AA

2

41

TM1

 

contig090292-BriORs.W115

CAG.CAG

0

52

IN 1

 

contig090301-BriORs.W116

TAT.CAG

0

49

IN 1

 

contig046002-ZebORs.K090

AAG.TAT

0

24

N ter

 

contig067811-ZebORs.W140

CAA.CAG

0

50

IN 1

 

contig062664-ZebORs.W141

AAA.CA

2

43

IN 1

 

contig025842-ZebORs.W142

AAA.CAC

0

51

IN 1

 

contig025841-ZebORs.W139

AGT.ATC

0

52

IN 1

 

contig045454-BurORs.W131

CAA.CAG

0

50

IN 1

 

contig066785-BurORs.W148

TAT.CAG

0

49

IN 1

 

contig045453-BurORs.W132

CAC.CAG

0

50

IN 1

 

contig045452-BurORs.W133

CAC.CAG

0

52

IN 1

 

contig045453-BurORs.W134

AAC.AAG

0

50

IN 1

 

contig041638-BurORs.W135

AAA.CA

2

43

IN 1

 

contig041640-BurORs.V144

CGA.CAC

0

59

IN 1

 

contig049605-BurORs.AB153

AAC.AGT

0

77

IN 1

 

contig046708-TilORs.K143

AAG.TAT

0

24

N ter

 

contig027203-TilORs.W238

CAC.CAG

0

50

IN 1

 

contig027204-TilORs.W239

AAC.CGG

0

50

IN 1

 

contig027206-TilORs.W240

CAC.CAG

0

50

IN 1

 

contig027209-TilORs.W241

CAC.CAG

0

50

IN 1

 

contig027202-TilORs.W243

AAA.CAC

0

51

IN 1

 

contig046717-TilORs.AB275

TAT.GTG

0

72

TM1

 

contig027194-TilORs.V262

CGA.CAC

0

59

IN 1

3 coding exons

contig046495-NyeORs.I079

GAG.AGG

0

121

IN 2

  

ACA.ATC

0

232

OUT3

 

contig051999-NyeORs.U128

TAT.CA

2

15

N ter

  

CAC.CAG

0

54

IN 1

 

contig090301-BriORs.U109

TAT.CAG

0

16

N ter

  

CAG.GAT

0

56

OUT1

 

contig025847-ZebORs.U137

TAT.CAG

0

16

N ter

  

CAC.CAG

0

54

IN 1

 

contig026932-ZebORs.I082

GAC.AG

2

125

IN 2

  

GAC.ATC

0

200

OUT2-TM5

 

contig048321-BurORs.I076

GAC.AG

2

125

IN 2

  

ATC.TAT

0

201

OUT2

 

contig041640-BurORs.U130

TAT.CA

2

15

N ter

  

CAC.CAG

0

54

IN 1

 

contig046690-TilORs.I128

GAC.AG

2

120

IN 2

  

AAC.AT

2

194

OUT2-TM5

 

contig046694-TilORs.I129

GAC.AG

2

125

IN 2

  

ATC.TAT

0

201

OUT2-TM5

 

contig046695-TilORs.I130

GAC.AG

2

120

IN 2

  

ATC.TAT

0

196

OUT2-TM5

 

contig027194-TilORs.U236

TAT.CA

2

15

N ter

  

CAC.CAG

0

54

IN 1

4 coding exons

contig090302-BriORs.V122

CAC.AG

2

80

IN 1

  

CTT.CTG

0

127

OUT1

  

GTG.CAG

0

269

TM6

 

contig025847-ZebORs.V149

CAC.AG

2

62

IN 1

  

CTT.CTG

0

109

OUT1

  

GTG.CAG

0

251

TM6

 

contig041641-BurORs.T129

CCC.AG

2

48

IN 1

  

AAC.AAG

0

96

OUT1

  

GTC.CAG

0

184

TM5

  1. N ter: Extracellular end, IN: Internal loops, TM: Transmembrane region, OUT: External loops. OR belonging to the different cichlids are alternatively colored.