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Table 7 Intron positions within OR genes

From: Inventory of the cichlid olfactory receptor gene repertoires: identification of olfactory genes with more than one coding exon

  OR names Last codon Intron phase Codon position Intron position
2 coding exons contig034988-NyeORs.A033 GTC.AG 2 159 TM4
  contig050024-NyeORs.W129 CAA.CAG 0 50 IN 1
  contig050025-NyeORs.W131 AAC.AAG 0 50 IN 1
  contig050025-NyeORs.W130 CAC.CAG 0 50 IN 1/TM2
  contig050026-NyeORs.W132 CAC.CAG 0 52 IN 1
  contig090286-BriORs.W112 CAA.CAG 0 50 IN 1
  contig090288-BriORs.W113 CAA.CAG 0 50 IN 1
  contig090291-BriORs.W114 AAC.AA 2 41 TM1
  contig090292-BriORs.W115 CAG.CAG 0 52 IN 1
  contig090301-BriORs.W116 TAT.CAG 0 49 IN 1
  contig046002-ZebORs.K090 AAG.TAT 0 24 N ter
  contig067811-ZebORs.W140 CAA.CAG 0 50 IN 1
  contig062664-ZebORs.W141 AAA.CA 2 43 IN 1
  contig025842-ZebORs.W142 AAA.CAC 0 51 IN 1
  contig025841-ZebORs.W139 AGT.ATC 0 52 IN 1
  contig045454-BurORs.W131 CAA.CAG 0 50 IN 1
  contig066785-BurORs.W148 TAT.CAG 0 49 IN 1
  contig045453-BurORs.W132 CAC.CAG 0 50 IN 1
  contig045452-BurORs.W133 CAC.CAG 0 52 IN 1
  contig045453-BurORs.W134 AAC.AAG 0 50 IN 1
  contig041638-BurORs.W135 AAA.CA 2 43 IN 1
  contig041640-BurORs.V144 CGA.CAC 0 59 IN 1
  contig049605-BurORs.AB153 AAC.AGT 0 77 IN 1
  contig046708-TilORs.K143 AAG.TAT 0 24 N ter
  contig027203-TilORs.W238 CAC.CAG 0 50 IN 1
  contig027204-TilORs.W239 AAC.CGG 0 50 IN 1
  contig027206-TilORs.W240 CAC.CAG 0 50 IN 1
  contig027209-TilORs.W241 CAC.CAG 0 50 IN 1
  contig027202-TilORs.W243 AAA.CAC 0 51 IN 1
  contig046717-TilORs.AB275 TAT.GTG 0 72 TM1
  contig027194-TilORs.V262 CGA.CAC 0 59 IN 1
3 coding exons contig046495-NyeORs.I079 GAG.AGG 0 121 IN 2
   ACA.ATC 0 232 OUT3
  contig051999-NyeORs.U128 TAT.CA 2 15 N ter
   CAC.CAG 0 54 IN 1
  contig090301-BriORs.U109 TAT.CAG 0 16 N ter
   CAG.GAT 0 56 OUT1
  contig025847-ZebORs.U137 TAT.CAG 0 16 N ter
   CAC.CAG 0 54 IN 1
  contig026932-ZebORs.I082 GAC.AG 2 125 IN 2
   GAC.ATC 0 200 OUT2-TM5
  contig048321-BurORs.I076 GAC.AG 2 125 IN 2
   ATC.TAT 0 201 OUT2
  contig041640-BurORs.U130 TAT.CA 2 15 N ter
   CAC.CAG 0 54 IN 1
  contig046690-TilORs.I128 GAC.AG 2 120 IN 2
   AAC.AT 2 194 OUT2-TM5
  contig046694-TilORs.I129 GAC.AG 2 125 IN 2
   ATC.TAT 0 201 OUT2-TM5
  contig046695-TilORs.I130 GAC.AG 2 120 IN 2
   ATC.TAT 0 196 OUT2-TM5
  contig027194-TilORs.U236 TAT.CA 2 15 N ter
   CAC.CAG 0 54 IN 1
4 coding exons contig090302-BriORs.V122 CAC.AG 2 80 IN 1
   CTT.CTG 0 127 OUT1
   GTG.CAG 0 269 TM6
  contig025847-ZebORs.V149 CAC.AG 2 62 IN 1
   CTT.CTG 0 109 OUT1
   GTG.CAG 0 251 TM6
  contig041641-BurORs.T129 CCC.AG 2 48 IN 1
   AAC.AAG 0 96 OUT1
   GTC.CAG 0 184 TM5
  1. N ter: Extracellular end, IN: Internal loops, TM: Transmembrane region, OUT: External loops. OR belonging to the different cichlids are alternatively colored.