Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys

BMC Genomics

Table 1 Features of Stachybotrys genome and proteome assemblies

	S. chlorohalonata 40285	S. chartarum 40288	S. chartarum 40293	S. chartarum 7711	F. graminearum PH-1
NCBI Acc. #	APWP00000000	AQPQ00000000	ASEQ00000000	APIU00000000	AACM00000000
Paired reads [×10 ⁶ ]	66.4	58.6	68.8	71.4	NA
Assembled sequences	1246	957	826	897	36
Assembly size [Mbp]	34.2	36.5	36.1	36.2	36.2
Fold coverage	196	162	192	199	10
N ₅₀ length [kbp]	116	130	214	177	5350
Assembly gaps [Mbp]	0.25	0.08	0.16	0.13	0.22
Repeat content [%]	1.62	0.93	0.93	1.01	0.66
Gene content [%]	51.75	53.42	53.19	53.31	57.18
Coding genes [predicted]	10866	11719	11532	11543	13332
Median gene length [bp]/protein length [aa]	1357/403	1377/411	1380/412	1379/413	1259/375
Mean exons per gene	2.8	2.8	2.8	2.8	2.8
Median: exon length [bp]/intron length [bp]	293/59	296/59	297/59	296/59	255/55
Predicted products with identified CDD domain [%]	65.87	65.84	66.29	65.94	61.43

Stachybotrys assemblies include all contigs and scaffolds of at least 1-kbp. N₅₀ is the sequence that includes the middle nucleotide of the assembly when the sequences are ordered by length.

ISSN: 1471-2164