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Table 2 SD distribution on different pig chromosomes

From: Global copy number analyses by next generation sequencing provide insight into pig genome variation

Chr. name

Chr. length

Pairwise alignments

# of pairwise alignments within different distances

Length of pairwise alignments within different distances (bp)a

  

#

Total length (bp)

<1 Mb

1-5 Mb

5-10 Mb

10-20 Mb

≥20 Mb

Interchrom.

<1 Mb

1-5 Mb

5-10 Mb

10-20 Mb

≥20 Mb

Interchrom.

1

315321322

591

3401742

222

32

2

39

26

270

2276538

246929

13940

295496

184744

1228308

2

162569375

704

5101992

507

2

 

1

32

162

3902938

20557

 

2826

689210

931033

3

144787322

295

2014549

136

1

9

2

 

147

1564008

4376

152465

11584

 

911669

4

143465943

287

1294886

235

6

  

1

45

1186413

49251

  

2684

111127

5

111506441

151

1053226

101

3

   

47

806564

148002

   

215744

6

157765593

386

1395733

215

3

1

 

21

146

1126648

14458

8377

 

97078

220477

7

134764511

796

5214940

457

63

3

1

166

106

3585639

1101644

22484

3239

2E + 06

847577

8

148491826

119

995588

66

6

2

 

1

44

853267

35624

8115

 

4117

98206

9

153670197

374

1888550

280

   

2

92

1595039

   

8290

311899

10

79102373

282

1981250

126

20

4

2

26

104

1262050

286602

18420

10717

395811

548851

11

87690581

135

999435

87

13

   

35

918600

151163

   

55653

12

63588571

165

803476

134

3

4

  

24

737632

14381

10696

  

49824

13

218635234

231

1238900

161

  

2

3

65

1080461

  

6220

11273

142648

14

153851969

351

1595288

289

1

  

1

60

1425665

2202

  

4606

168661

15

157681621

401

1640639

286

4

  

1

110

1458101

23471

  

9431

340589

16

86898991

332

620789

205

    

127

546490

    

163337

17

69701581

229

1089155

144

43

19

 

4

19

660648

434075

166802

 

19169

78385

18

61220071

65

275384

21

    

44

161453

    

130231

X

144288218

368

2254851

254

16

2

4

4

88

1847734

93124

22251

70387

66276

247951

Y

1637716

5

34635

 

2

   

3

 

28541

   

6094

  1. aPairwise alignments were merged into non-overlapping intervals which are used for measurements of the length.