Table 3 Summaries of SD/deletion calls of the 13 analyzed pigs on the number, total length and average length
From: Global copy number analyses by next generation sequencing provide insight into pig genome variation
Sample | Number | Total length (Mb) | Mean size (kb) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | # of total calls | # of duplications | # of deletions | All calls | Duplications | Deletions | All calls | Duplications | Deletions |
A1 | 1064 | 763 | 301 | 48.5 | 40.9 | 7.6 | 45.6 | 53.7 | 25.2 |
C3 | 930 | 744 | 186 | 44.6 | 40.1 | 4.5 | 47.9 | 53.9 | 24.0 |
D4 | 1311 | 1130 | 181 | 48.8 | 44.8 | 3.9 | 37.2 | 39.7 | 21.8 |
DN1 | 951 | 684 | 267 | 45.3 | 38.9 | 6.4 | 47.6 | 56.9 | 23.8 |
DN5 | 1060 | 765 | 295 | 48.2 | 40.7 | 7.6 | 45.5 | 53.1 | 25.6 |
M2 | 1135 | 816 | 319 | 47.2 | 40.0 | 7.2 | 41.6 | 49.0 | 22.6 |
MS7 | 1052 | 795 | 257 | 49.6 | 43.6 | 6.0 | 47.1 | 54.8 | 23.4 |
MS8 | 958 | 711 | 247 | 44.9 | 38.5 | 6.4 | 46.9 | 54.2 | 25.9 |
R2 | 1099 | 766 | 333 | 44.7 | 37.2 | 7.5 | 40.7 | 48.5 | 22.6 |
W1 | 993 | 756 | 237 | 46.7 | 40.7 | 6.0 | 47.0 | 53.8 | 25.4 |
Y2 | 870 | 728 | 142 | 42.4 | 39.1 | 3.3 | 48.8 | 53.7 | 23.3 |
Z2 | 1025 | 753 | 272 | 46.2 | 39.7 | 6.5 | 45.0 | 52.7 | 23.9 |
Z5 | 1069 | 798 | 271 | 47.1 | 40.9 | 6.2 | 44.1 | 51.3 | 22.9 |
On average | 1040 | 785 | 254 | 46.5 | 40.4 | 6.1 | 45.0 | 51.9 | 23.9 |