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Table 4 Details of Applied Biosystems Primers ( n= 18), including the housekeeping gene, ALG9

From: Gene network-based analysis identifies two potential subtypes of small intestinal neuroendocrine tumors

SI-NEN Biomarker or housekeeping gene NCBI chromosome location UniGene ID RefSeq Amplicon produced using forward and reverse primers  
Symbol Name Length Exon boundary
ALG9* Asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog Chr. 11–111652919 - 111742305 Hs.503850 NM_024740.2 68 4-5
ADCY2 Adenylate cyclase 2 (brain) Chr.5: 7396343 - 7830194 Hs.481545 NM_020546.2 81 22-23
AKT3 v-akt murine thymoma viral oncogene homolog 3 Chr.1: 243651535 – 244006886 Hs.498292 NM_001206729.1 100 11-12
APLP1 Amyloid beta (A4) precursor-like protein 1 Chr.19: 36359401 – 36370699 Hs.74565 NM_001024807.1 142 11-12
BEX1 Brain expressed, X-linked 1 Chr.X: 102317581 – 102319168 Hs.334370 NM_018476.3 62 2-3
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha Chr.19: 33790840 - 33793430 Hs.740432 NM_004364.3 77 1-1
CPE carboxypeptidase E Chr.4: 166300097 - 166419482 Hs.75360 NM_001873.2 106 7-8
INSM1 Insulinoma-associated 1 Chr.20: 20348765 - 20351593 Hs.89584 NM_002196.2 72 1-1
NEUROD1 Neuronal differentiation 1 Chr.2: 182541194 - 182545381 Hs.574626 NM_002500.4 110 2-2
NKX2-2 NK2 homeobox 2 Chr.20: 21491648 - 21494664 Hs.516922 NM_002509.3 114 1-2
PCSK1 Proprotein convertase subtilisin/kexin type 1 Chr.5: 95726040 - 95768985 Hs.78977 NM_000439.4 96 13-14
PNMA2 paraneoplastic Ma antigen 2 Chr.8: 26362196 - 26371483 Hs.591838 NM_007257.5 60 3-3
SCG2 Secretogranin II Chr.2: 224461658 – 224467121 Hs.516726 NM_003469.4 69 1-2
SCG3 Secretogranin III Chr.15: 51973550 - 52013223 Hs.232618 NM_001165257.1 92 5-6
SCG5 Secretogranin V Chr.15: 32933870 - 32989298 s.156540 NM_001144757.1 84 5-6
SCN3A Sodium channel, voltage-gated, type III, alpha subunit Chr.2: 165944030 – 166060577 Hs.435274 NM_001081676.1 71 12-13
SDHD Succinate dehydrogenase complex, subunit D, integral membrane protein Chr.11: 111957571 – 111966518 Hs.356270 NM_003002.2 187 4-4
ST18 Suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) Chr.8: 53023392 – 53322439 Hs.655499 NM_014682.2 69 22-23
  1. *ALG9 = housekeeping gene.