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Table 4 Details of Applied Biosystems Primers ( n= 18), including the housekeeping gene, ALG9

From: Gene network-based analysis identifies two potential subtypes of small intestinal neuroendocrine tumors

SI-NEN Biomarker or housekeeping gene

NCBI chromosome location

UniGene ID

RefSeq

Amplicon produced using forward and reverse primers

 

Symbol

Name

Length

Exon boundary

ALG9*

Asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog

Chr. 11–111652919 - 111742305

Hs.503850

NM_024740.2

68

4-5

ADCY2

Adenylate cyclase 2 (brain)

Chr.5: 7396343 - 7830194

Hs.481545

NM_020546.2

81

22-23

AKT3

v-akt murine thymoma viral oncogene homolog 3

Chr.1: 243651535 – 244006886

Hs.498292

NM_001206729.1

100

11-12

APLP1

Amyloid beta (A4) precursor-like protein 1

Chr.19: 36359401 – 36370699

Hs.74565

NM_001024807.1

142

11-12

BEX1

Brain expressed, X-linked 1

Chr.X: 102317581 – 102319168

Hs.334370

NM_018476.3

62

2-3

CEBPA

CCAAT/enhancer binding protein (C/EBP), alpha

Chr.19: 33790840 - 33793430

Hs.740432

NM_004364.3

77

1-1

CPE

carboxypeptidase E

Chr.4: 166300097 - 166419482

Hs.75360

NM_001873.2

106

7-8

INSM1

Insulinoma-associated 1

Chr.20: 20348765 - 20351593

Hs.89584

NM_002196.2

72

1-1

NEUROD1

Neuronal differentiation 1

Chr.2: 182541194 - 182545381

Hs.574626

NM_002500.4

110

2-2

NKX2-2

NK2 homeobox 2

Chr.20: 21491648 - 21494664

Hs.516922

NM_002509.3

114

1-2

PCSK1

Proprotein convertase subtilisin/kexin type 1

Chr.5: 95726040 - 95768985

Hs.78977

NM_000439.4

96

13-14

PNMA2

paraneoplastic Ma antigen 2

Chr.8: 26362196 - 26371483

Hs.591838

NM_007257.5

60

3-3

SCG2

Secretogranin II

Chr.2: 224461658 – 224467121

Hs.516726

NM_003469.4

69

1-2

SCG3

Secretogranin III

Chr.15: 51973550 - 52013223

Hs.232618

NM_001165257.1

92

5-6

SCG5

Secretogranin V

Chr.15: 32933870 - 32989298

s.156540

NM_001144757.1

84

5-6

SCN3A

Sodium channel, voltage-gated, type III, alpha subunit

Chr.2: 165944030 – 166060577

Hs.435274

NM_001081676.1

71

12-13

SDHD

Succinate dehydrogenase complex, subunit D, integral membrane protein

Chr.11: 111957571 – 111966518

Hs.356270

NM_003002.2

187

4-4

ST18

Suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)

Chr.8: 53023392 – 53322439

Hs.655499

NM_014682.2

69

22-23

  1. *ALG9 = housekeeping gene.