Table 1 Summary of sequence read alignments to three genome references
From: RNA-Seq transcriptome analysis of Spirodela dormancy without reproduction
Sample | Qualified total reads | Reads # map nuclear genome | Map nuclear genome | Nuclear coverage | Map chloroplast | Map mitochondria | Map rDNA |
|---|---|---|---|---|---|---|---|
Fronds 1 | 24,356,014 | 12,795,916 | 53% | 42 | 35% | 1% | 4% |
Fronds 2 | 41,310,111 | 22,039,845 | 53% | 72 | 37% | 3% | 4% |
Fronds 3 | 28,333,911 | 16,444,539 | 58% | 54 | 29% | 2% | 6% |
Fronds 4 | 28,188,669 | 16,282,775 | 58% | 53 | 30% | 2% | 9% |
Turions 1 | 26,484,522 | 15,431,023 | 58% | 50 | 28% | 2% | 1% |
Turions 2 | 28,466,211 | 16,123,639 | 57% | 53 | 34% | 2% | 2% |
Turions 3 | 25,754,050 | 15,697,393 | 61% | 51 | 26% | 2% | 3% |
Turions 4 | 14,996,833 | 8,824,987 | 59% | 29 | 29% | 2% | 1% |